L. Margulis and R. Fester, Symbiosis as a source of evolutionary innovation, pp.2-14, 1991.

F. Rohwer, V. Seguritan, and F. Azam, Diversity and distribution of coral-associated bacteria, Marine Ecology Progress Series, vol.243, pp.1-10, 2002.
DOI : 10.3354/meps243001

A. Hernandez-agreda, R. Gates, and T. Ainsworth, Defining the Core Microbiome in Corals??? Microbial Soup, Trends in Microbiology, vol.25, issue.2, pp.125-165, 2017.
DOI : 10.1016/j.tim.2016.11.003

R. T. Jefferson and . Hologenome, Agriculture, environment and the developing world: a future of PCR Cold Spring Harbor, 1994.

E. Rosenberg, O. Koren, L. Reshef, R. Efrony, and I. Zilber-rosenberg, The role of microorganisms in coral health, disease and evolution, Nature Reviews Microbiology, vol.70, issue.5, pp.355-62, 2007.
DOI : 10.1093/icb/34.1.115

I. Zilber-rosenberg and E. Rosenberg, Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution, FEMS Microbiology Reviews, vol.32, issue.5, pp.723-758, 2008.
DOI : 10.1080/089106001750462669

S. Bordenstein and K. Theis, Host Biology in Light of the Microbiome: Ten Principles of Holobionts and Hologenomes, PLOS Biology, vol.10, issue.7, p.1002226, 2015.
DOI : 10.1371/journal.ppat.1004093

R. Guerrero, L. Margulis, and M. Berlanga, Symbiogenesis: the holobiont as a unit of evolution, Int Microbiol, vol.16, pp.133-176, 2013.

M. Mcfall-ngai, M. Hadfield, T. Bosch, H. Carey, T. Domazet-lo?o et al., Animals in a bacterial world, a new imperative for the life sciences, Proceedings of the National Academy of Sciences, vol.110, issue.9, pp.3229-3265, 2013.
DOI : 10.1016/j.copbio.2011.11.028
URL : https://hal.archives-ouvertes.fr/hal-00972300

T. Bosch and M. Mcfall-ngai, Metaorganisms as the new frontier, Zoology, vol.114, issue.4, pp.185-90, 2011.
DOI : 10.1016/j.zool.2011.04.001
URL : http://europepmc.org/articles/pmc3992624?pdf=render

L. Blackall, B. Wilson, and M. Van-oppen, Coral-the world's most diverse symbiotic ecosystem, Molecular Ecology, vol.92, issue.21, pp.5330-5377, 2015.
DOI : 10.1017/S0025315411001548
URL : http://onlinelibrary.wiley.com/doi/10.1111/mec.13400/pdf

L. Muscatine and J. Porter, Reef Corals: Mutualistic Symbioses Adapted to Nutrient-Poor Environments, BioScience, vol.1, issue.7, pp.454-60, 1977.
DOI : 10.2307/75578

S. Davy, D. Allemand, and V. Weis, Cell Biology of Cnidarian-Dinoflagellate Symbiosis, Microbiology and Molecular Biology Reviews, vol.76, issue.2, pp.229-61, 2012.
DOI : 10.1128/MMBR.05014-11

M. Desalvo, S. Sunagawa, P. Fisher, C. Voolstra, R. Iglesias-prieto et al., genotypes, Molecular Ecology, vol.36, issue.6, pp.1174-86, 2010.
DOI : 10.1111/j.1365-294X.2007.03612.x

M. Coffroth and S. Santos, Genetic Diversity of Symbiotic Dinoflagellates in the Genus Symbiodinium, Protist, vol.156, issue.1, pp.19-34, 2005.
DOI : 10.1016/j.protis.2005.02.004

J. Mieog, M. Van-oppen, N. Cantin, and W. Stam, Real-time PCR reveals a high incidence of Symbiodinium clade D at low levels in four scleractinian corals across the Great Barrier Reef: implications for symbiont shuffling, Coral Reefs, vol.87, issue.3, pp.449-57, 2007.
DOI : 10.1016/S0022-0981(03)00121-7

H. Rouzé, G. Lecellier, D. Saulnier, and V. Berteaux-lecellier, spp. colonization, Ecology and Evolution, vol.158, issue.2, pp.560-72, 2016.
DOI : 10.1007/s00227-010-1544-z

V. Weis, W. Reynolds, M. Deboer, and D. Krupp, Host-symbiont specificity during onset of symbiosis between the dinoflagellates Symbiodinium spp. and planula larvae of the scleractinian coral Fungia scutaria, Coral Reefs, vol.20, issue.3, pp.301-309, 2001.
DOI : 10.1007/s003380100179

A. Baker, C. Starger, T. Mcclanahan, and P. Glynn, Coral reefs: Corals' adaptive response to climate change, Nature, vol.43, issue.7001, p.741, 2004.
DOI : 10.1016/0304-3800(94)00132-4

A. Jones, R. Berkelmans, M. Van-oppen, J. Mieog, and W. Sinclair, A community change in the algal endosymbionts of a scleractinian coral following a natural bleaching event: field evidence of acclimatization, Proceedings of the Royal Society B: Biological Sciences, vol.204, issue.8, pp.1359-65, 2008.
DOI : 10.1016/S0044-8486(01)00842-0

D. Thornhill, T. Lajeunesse, D. Kemp, and W. Fitt, Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion, Marine Biology, vol.25, issue.4, pp.711-733, 2006.
DOI : 10.1016/S0742-8413(00)00099-2

R. Littman, Y. Singh, B. Willis, J. Ahmad, C. Pfeffer et al., Diversities of coral-associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef, FEMS Microbiology Ecology, vol.49, issue.2, pp.152-63, 2009.
DOI : 10.1016/j.femsec.2005.05.002

J. Meyer, J. Rodgers, B. Dillard, V. Paul, and M. Teplitski, Epimicrobiota Associated with the Decay and Recovery of Orbicella Corals Exhibiting Dark Spot Syndrome, Frontiers in Microbiology, vol.69, issue.e67745, p.893, 2016.
DOI : 10.1007/978-0-387-98141-3

Y. Sato, B. Willis, and D. Bourne, Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida, The ISME Journal, vol.2, issue.2, pp.203-217, 2009.
DOI : 10.1128/AEM.68.1.316-325.2002

D. Bourne, D. Bourne, Y. Iida, Y. Iida, S. Uthicke et al., Changes in coral-associated microbial communities during a bleaching event, The ISME Journal, vol.64, issue.4, pp.350-63, 2007.
DOI : 10.1007/BF00265014

O. Pantos, P. Bongaerts, P. Dennis, G. Tyson, and O. Hoegh-guldberg, Habitat-specific environmental conditions primarily control the microbiomes of the coral Seriatopora hystrix, The ISME Journal, vol.1, issue.9, pp.1916-1943, 2015.
DOI : 10.1099/ijs.0.014357-0

K. Carpenter, M. Abrar, G. Aeby, and R. Aronson, One-Third of Reef-Building Corals Face Elevated Extinction Risk from Climate Change and Local Impacts, Science, vol.24, issue.22, pp.560-563, 2008.
DOI : 10.1111/j.1365-2486.2004.00836.x

T. Hughes, J. Kerry, M. Álvarez-noriega, J. Álvarez-romero, K. Anderson et al., Global warming and recurrent mass bleaching of corals, Nature, vol.108, issue.7645, pp.373-380, 2017.
DOI : 10.1029/2002JD002670

R. Van-woesik, K. Sakai, A. Ganase, and Y. Loya, Revisiting the winners and the losers a decade after coral bleaching, Marine Ecology Progress Series, vol.434, pp.67-76, 2011.
DOI : 10.3354/meps09203

P. Gélin, B. Postaire, C. Fauvelot, and H. Magalon, Reevaluating species number, distribution and endemism of the coral genus Pocillopora Lamarck, 1816 using species delimitation methods and microsatellites, Molecular Phylogenetics and Evolution, vol.109, pp.430-476, 2017.
DOI : 10.1016/j.ympev.2017.01.018

J. Pinzón, E. Sampayo, E. Cox, L. Chauka, C. Chen et al., , Scleractinia), Journal of Biogeography, vol.37, issue.8, pp.1595-608, 2013.
DOI : 10.1146/annurev.ecolsys.37.091305.110136

S. Schmidt-roach, K. Miller, P. Lundgren, and N. Andreakis, species complex (Scleractinia; Pocilloporidae) using morphology and genetics, Zoological Journal of the Linnean Society, vol.144, issue.1, pp.1-33, 2014.
DOI : 10.1007/s00227-003-1209-2

M. Adjeroud, A. Guérécheau, J. Vidal-dupiol, J. Flot, S. Arnaud-haond et al., Genetic diversity, clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular, fragmented reef system, Marine Biology, vol.166, issue.12, pp.531-572, 2013.
DOI : 10.1038/166247a0
URL : https://hal.archives-ouvertes.fr/halsde-01007685

J. Flot, Vers une taxonomie moléculaire des coraux du genre Pocillopora, 2007.

B. Winnepenninckx, T. Backeljau, D. Wachter, and R. , Extraction of high molecular weight DNA from molluscs, Trends Genet, vol.9, p.407, 1993.

J. Flot and S. Tillier, The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: The putative D-loop and a novel ORF of unknown function, Gene, vol.401, issue.1-2, pp.80-87, 2007.
DOI : 10.1016/j.gene.2007.07.006

K. Tamura, G. Stecher, D. Peterson, A. Filipski, and S. Kumar, MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0, Molecular Biology and Evolution, vol.87, issue.12, pp.2725-2734, 2013.
DOI : 10.1128/JVI.02478-12
URL : https://academic.oup.com/mbe/article-pdf/30/12/2725/19498310/mst197.pdf

A. Klindworth, E. Pruesse, T. Schweer, J. Peplies, C. Quast et al., Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies, Nucleic Acids Research, vol.3, issue.1, p.1, 2012.
DOI : 10.4056/aigs.1443528

T. Lajeunesse and R. Trench, Biogeography of two species of Symbiodinium (Freudenthal) inhabiting the intertidal sea anemone Anthopleura elegantissima (Brandt), The Biological Bulletin, vol.199, issue.2, pp.126-160, 2000.
DOI : 10.2307/1542872

K. Quigley, K. Quigley, S. Davies, S. Davies, C. Kenkel et al., Deep-Sequencing Method for Quantifying Background Abundances of Symbiodinium Types: Exploring the Rare Symbiodinium Biosphere in Reef-Building Corals, PLoS ONE, vol.1746, issue.4, p.94297, 2014.
DOI : 10.1371/journal.pone.0094297.s005

F. Escudié, L. Auer, M. Bernard, M. Mariadassou, L. Cauquil et al., FROGS: Find, Rapidly, OTUs with Galaxy Solution, Bioinformatics, vol.73, 2017.
DOI : 10.1128/AEM.00062-07

T. Mago? and S. Salzberg, FLASH: fast length adjustment of short reads to improve genome assemblies, Bioinformatics, vol.5, issue.7, pp.2957-63, 2011.
DOI : 10.1371/journal.pone.0011840

M. Martin, Cutadapt removes adapter sequences from high-throughput sequencing reads, EMBnet.journal, vol.17, issue.1, p.10, 2011.
DOI : 10.14806/ej.17.1.200

F. Mahé, T. Rognes, C. Quince, D. Vargas, C. Dunthorn et al., Swarm: robust and fast clustering method for amplicon-based studies, PeerJ, vol.92, issue.1, p.593, 2014.
DOI : 10.7717/peerj.593/supp-8

T. Rognes, T. Flouri, B. Nichols, C. Quince, and F. Mahé, Table 2: Paired-end reads merging performance., PeerJ, vol.30, issue.5, p.2584, 2016.
DOI : 10.7717/peerj.2584/table-2

S. Altschul, W. Gish, W. Miller, E. Myers, and D. Lipman, Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-413, 1990.
DOI : 10.1016/S0022-2836(05)80360-2

R. Team and . Core, R: a language and environment for statistical computing. R Foundation for Statistical Computing, 2013.

P. Mcmurdie and S. Holmes, phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data, PLoS ONE, vol.473, issue.4, p.61217, 2013.
DOI : 10.1371/journal.pone.0061217.s002

A. Ramette, Multivariate analyses in microbial ecology, FEMS Microbiology Ecology, vol.24, issue.2, pp.142-60, 2007.
DOI : 10.1046/j.1420-9101.1998.11050549.x
URL : https://academic.oup.com/femsec/article-pdf/62/2/142/18101219/62-2-142.pdf

P. Legendre and E. Gallagher, Ecologically meaningful transformations for ordination of species data, Oecologia, vol.129, issue.2, pp.271-80, 2001.
DOI : 10.1007/s004420100716

T. Lajeunesse, ???Species??? Radiations of Symbiotic Dinoflagellates in the Atlantic and Indo-Pacific Since the Miocene-Pliocene Transition, Molecular Biology and Evolution, vol.22, issue.3, pp.570-81, 2004.
DOI : 10.1098/rspb.2001.1733

X. Pochon, J. Montoya-burgos, B. Stadelmann, and J. Pawlowski, Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium, Molecular Phylogenetics and Evolution, vol.38, issue.1, pp.20-30, 2006.
DOI : 10.1016/j.ympev.2005.04.028

D. Combosch and S. Vollmer, Trans-Pacific RAD-Seq population genomics confirms introgressive hybridization in Eastern Pacific Pocillopora corals, Molecular Phylogenetics and Evolution, vol.88, pp.154-62, 2015.
DOI : 10.1016/j.ympev.2015.03.022

D. Combosch, H. Guzman, H. Schuhmacher, and S. Vollmer, Interspecific hybridization and restricted trans-Pacific gene flow in the Tropical Eastern Pacific Pocillopora, Molecular Ecology, vol.16, issue.5, pp.1304-1316, 2008.
DOI : 10.1146/annurev.ecolsys.37.091305.110136

J. Pinzón and T. Lajeunesse, Species delimitation of common reef corals in the genus Pocillopora using nucleotide sequence phylogenies, population genetics and symbiosis ecology, Molecular Ecology, vol.37, issue.2, pp.311-336, 2011.
DOI : 10.1111/j.0014-3820.2002.tb01360.x

A. Shade and J. Handelsman, Beyond the Venn diagram: the hunt for a core microbiome, Environmental Microbiology, vol.9, issue.1, pp.4-12, 2011.
DOI : 10.1186/1471-2180-9-259

D. Ainsworth, T. Krause, L. Bridge, T. Torda, G. et al., The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts, The ISME Journal, vol.9, issue.10, pp.2261-74, 2015.
DOI : 10.3389/fmicb.2012.00316

M. Kurahashi and A. Yokota, Endozoicomonas elysicola gen. nov., sp. nov., a ??-proteobacterium isolated from the sea slug Elysia ornata, Systematic and Applied Microbiology, vol.30, issue.3, pp.202-208, 2007.
DOI : 10.1016/j.syapm.2006.07.003

M. Neave, A. Apprill, C. Ferrier-pages, and C. Voolstra, Diversity and function of prevalent symbiotic marine bacteria in the genus Endozoicomonas, Applied Microbiology and Biotechnology, vol.105, issue.371, pp.8315-8339, 2016.
DOI : 10.1016/j.marpolbul.2015.12.045

M. Neave, C. Michell, A. Apprill, and C. Voolstra, Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts, Scientific Reports, vol.30, p.40579, 2017.
DOI : 10.1093/bioinformatics/btu031
URL : http://www.nature.com/articles/srep40579.pdf

O. Koren and E. Rosenberg, Bacteria Associated with the Bleached and Cave Coral Oculina patagonica, Microbial Ecology, vol.26, issue.3, pp.523-532, 2008.
DOI : 10.3354/meps111259

C. Chen, C. Tseng, C. Chen, and S. Tang, The dynamics of microbial partnerships in the coral Isopora palifera, The ISME Journal, vol.175, issue.4, pp.728-768, 2011.
DOI : 10.1126/science.289.5485.1724

J. Li, Q. Chen, L. Long, J. Dong, Y. J. Zhang et al., Bacterial dynamics within the mucus, tissue and skeleton of the coral Porites Lutea during different seasons. Sci Rep, p.7320, 2014.

K. Morrow, A. Moss, N. Chadwick, and M. Liles, ABSTRACT, Applied and Environmental Microbiology, vol.78, issue.18, pp.6438-6487, 2012.
DOI : 10.1128/AEM.01162-12

W. Miller, C. Parker, M. Rubenfield, G. Mendz, M. Wösten et al., The Complete Genome Sequence and Analysis of the Epsilonproteobacterium Arcobacter butzleri, PLoS ONE, vol.25, issue.2, p.1358, 2006.
DOI : 10.1371/journal.pone.0001358.s009

J. Frias-lopez, A. Zerkle, G. Bonheyo, and B. Fouke, Partitioning of Bacterial Communities between Seawater and Healthy, Black Band Diseased, and Dead Coral Surfaces, Applied and Environmental Microbiology, vol.68, issue.5, pp.2214-2242, 2002.
DOI : 10.1128/AEM.68.5.2214-2228.2002

A. De-castro, S. Araújo, A. Reis, R. Moura, R. Francini-filho et al., Bacterial Community Associated with Healthy and Diseased Reef Coral Mussismilia hispida from Eastern Brazil, Microbial Ecology, vol.3, issue.4, pp.658-67, 2010.
DOI : 10.1016/S0022-2836(05)80360-2

M. Séré, D. Wilkinson, M. Schleyer, P. Chabanet, J. Quod et al., Table 2: Total sequences read before and after sequence trimming, number of bacterial classes and genera and diversity indices for each sample and subsample of PorBBD (DT1a-DT1b and DT2a-DT2b), apparently healthy tissue (HT1a-HT1b and HT2a-HT2b) and control tissue (CTa and CTb)., PeerJ, vol.4, issue.4, p.2073, 2015.
DOI : 10.7717/peerj.2073/table-2

M. Sweet and J. Bythell, Ciliate and bacterial communities associated with White Syndrome and Brown Band Disease in reef-building corals, Environmental Microbiology, vol.40, issue.3, pp.2184-99, 2012.
DOI : 10.1111/j.1463-6409.2011.00473.x

L. Fan, M. Liu, R. Simister, N. Webster, and T. Thomas, Marine microbial symbiosis heats up: the phylogenetic and functional response of a sponge holobiont to thermal stress, The ISME Journal, vol.64, issue.5, pp.991-1002, 2013.
DOI : 10.1023/A:1020565701210

A. Lokmer, M. Wegner, and K. , Hemolymph microbiome of Pacific oysters in response to temperature, temperature stress and infection, The ISME Journal, vol.28, issue.3, pp.670-82, 2014.
DOI : 10.1111/j.1462-2920.2011.02448.x

N. Boulotte, S. Dalton, A. Carroll, P. Harrison, H. Putnam et al., Exploring the Symbiodinium rare biosphere provides evidence for symbiont switching in reef-building corals, The ISME Journal, vol.530, issue.53, pp.2693-701, 2016.
DOI : 10.1007/s00338-010-0649-7

L. Thomas, G. Kendrick, W. Kennington, Z. Richards, and M. Stat, corals from geographical extremes of Western Australia with 454 amplicon pyrosequencing, Molecular Ecology, vol.51, issue.12, pp.3113-3139, 2014.
DOI : 10.1007/s002390010064

M. Ziegler, F. Seneca, L. Yum, S. Palumbi, and C. Voolstra, Bacterial community dynamics are linked to patterns of coral heat tolerance, Nature Communications, vol.31, p.14213, 2017.
DOI : 10.1038/nbt.2676

H. Rouzé, G. Lecellier, D. Saulnier, S. Planes, Y. Gueguen et al., 28S DNA sequences mentioned in the paper, PeerJ, vol.116, issue.9, p.2856, 2017.
DOI : 10.7717/peerj.2856/supp-9

B. Hume, D. Angelo, C. Burt, J. Baker, A. Riegl et al., Corals from the Persian/Arabian Gulf as models for thermotolerant reef-builders: Prevalence of clade C3 Symbiodinium, host fluorescence and ex situ temperature tolerance, Marine Pollution Bulletin, vol.72, issue.2, pp.313-335, 2013.
DOI : 10.1016/j.marpolbul.2012.11.032

L. Weber, E. Deforce, and A. Apprill, Optimization of DNA extraction for advancing coral microbiota investigations, Microbiome, vol.47, issue.1, p.18, 2017.
DOI : 10.1603/033.047.0112

N. Fabina, H. Putnam, E. Franklin, M. Stat, and R. Gates, symbioses, Global Change Biology, vol.434, issue.531, pp.3306-3322, 2013.
DOI : 10.3354/meps09203

D. Bourne, D. Bourne, P. Dennis, P. Dennis, S. Uthicke et al., Coral reef invertebrate microbiomes correlate with the presence of photosymbionts, The ISME Journal, vol.12, issue.7, pp.1452-1460, 2013.
DOI : 10.1099/ijs.0.014357-0

J. Raina, E. Dinsdale, B. Willis, and D. Bourne, Do the organic sulfur compounds DMSP and DMS drive coral microbial associations?, Trends in Microbiology, vol.18, issue.3, pp.101-109, 2010.
DOI : 10.1016/j.tim.2009.12.002

T. Fan, K. Lin, F. Kuo, K. Soong, and L. Liu, Diel patterns of larval release by five brooding scleractinian corals, Marine Ecology Progress Series, vol.321, pp.133-175, 2006.
DOI : 10.3354/meps321133

P. Harrison and C. Wallace, Reproduction, dispersal and recruitment of scleractinian corals: Ecosystems of the world, Amsterdam: Ed. Z Dubinsky, pp.133-207, 1990.

A. Baird, J. Guest, and B. Willis, Systematic and Biogeographical Patterns in the Reproductive Biology of Scleractinian Corals, Annual Review of Ecology, Evolution, and Systematics, vol.40, issue.1, pp.551-71, 2009.
DOI : 10.1146/annurev.ecolsys.110308.120220

K. Whitaker, Genetic evidence for mixed modes of reproduction in the coral Pocillopora damicornis and its effect on population structure, Marine Ecology Progress Series, vol.306, pp.115-139, 2006.
DOI : 10.3354/meps306115

S. Yeoh and C. Dai, The production of sexual and asexual larvae within single broods of the scleractinian coral, Pocillopora damicornis, Marine Biology, vol.144, issue.2, pp.351-360, 2009.
DOI : 10.5479/si.00775630.354.1

P. Gélin, C. Fauvelot, V. Mehn, S. Bureau, H. Rouzé et al., Superclone Expansion, Long-Distance Clonal Dispersal and Local Genetic Structuring in the Coral Pocillopora damicornis Type ?? in Reunion Island, South Western Indian Ocean, PLOS ONE, vol.636, issue.1, p.169692, 2017.
DOI : 10.1371/journal.pone.0169692.s004

M. Neave, R. Rachmawati, L. Xun, C. Michell, D. Bourne et al., Differential specificity between closely related corals and abundant Endozoicomonas endosymbionts across global scales, The ISME Journal, vol.90, issue.1, pp.186-200, 2016.
DOI : 10.1007/BF00431399
URL : http://www.nature.com/ismej/journal/v11/n1/pdf/ismej201695a.pdf

R. Buddemeier and D. Fautin, Coral Bleaching as an Adaptive Mechanism, BioScience, vol.335, issue.5, pp.320-326, 1993.
DOI : 10.5479/si.00775630.335.1

H. Putnam, M. Stat, X. Pochon, and R. Gates, Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals, Proceedings of the Royal Society B: Biological Sciences, vol.6, issue.5, pp.4352-61, 2012.
DOI : 10.1371/journal.pone.0020434
URL : http://rspb.royalsocietypublishing.org/content/royprsb/279/1746/4352.full.pdf

N. Winkler, J. Pandolfi, and E. Sampayo, Symbiodinium identity alters the temperature-dependent settlement behaviour of Acropora millepora coral larvae before the onset of symbiosis, Proceedings of the Royal Society B: Biological Sciences, vol.7, issue.6, 2015.
DOI : 10.1371/journal.pone.0038730

N. Knowlton and F. Rohwer, Multispecies Microbial Mutualisms on Coral Reefs: The Host as a Habitat, The American Naturalist, vol.162, issue.S4, pp.51-62, 2003.
DOI : 10.1086/378684

R. Rowan, Coral bleaching: Thermal adaptation in reef coral symbionts, Nature, vol.251, issue.7001, p.742, 2004.
DOI : 10.1146/annurev.ecolsys.34.011802.132417

K. Fabricius, J. Mieog, P. Colin, D. Idip, and M. Van-oppen, Identity and diversity of coral endosymbionts (zooxanthellae) from three Palauan reefs with contrasting bleaching, temperature and shading histories, Molecular Ecology, vol.17, issue.Suppl., pp.2445-58, 2004.
DOI : 10.1093/bioinformatics/17.8.754

M. Stat and R. Gates, in Scleractinian Corals: A ???Nugget??? of Hope, a Selfish Opportunist, an Ominous Sign, or All of the Above?, Journal of Marine Biology, vol.105, issue.2, pp.1-9, 2011.
DOI : 10.1007/s00227-009-1263-5

M. Roth, R. Goericke, and D. Deheyn, Cold induces acute stress but heat is ultimately more deleterious for the reef-building coral Acropora yongei, Scientific Reports, vol.271, issue.1, p.240, 2012.
DOI : 10.1098/rspb.2004.2757

R. Tsang, P. Ang, and . Jr, Cold temperature stress and predation effects on corals: their possible roles in structuring a nonreefal coral community, Coral Reefs, vol.125, issue.6, pp.97-108, 2015.
DOI : 10.1175/1520-0493(1997)125<2605:CAIVOT>2.0.CO;2

R. Silverstein, R. Cunning, A. Baker, and D. Tenacious, in clade D remain in reef corals at both high and low temperature extremes despite impairment, The Journal of Experimental Biology, vol.220, issue.7, pp.1192-1198, 2017.
DOI : 10.1242/jeb.148239

B. Kim, S. Son, S. Min, J. Jeong, S. Kim et al., Weakening of the stratospheric polar vortex by Arctic sea-ice loss, Nature Communications, vol.118, p.4646, 2013.
DOI : 10.1175/2008JCLI2299.1

K. Theis, N. Dheilly, J. Klassen, R. Brucker, J. Baines et al., Getting the hologenome concept right: an eco-evolutionary framework for hosts and their microbiomes. mSystems, pp.28-44, 2016.
URL : https://hal.archives-ouvertes.fr/hal-01483722