A. Abelmann, R. Gersonde, G. Knorr, X. Zhang, B. Chapligin et al., The seasonal sea-ice zone in the glacial Southern Ocean as a carbon sink, Nat. Commun, 2015.

S. M. Adl, A. G. Simpson, C. E. Lane, J. Luke?, D. Bass et al., The Revised Classification of Eukaryotes, Journal of Eukaryotic Microbiology, vol.56, issue.5, pp.429-493, 2012.
DOI : 10.1016/j.ympev.2010.04.020

Z. H. Aitken, S. Luo, S. N. Reynolds, C. Thaulow, and G. , J. R, 2016.

, Microstructure provides insights into evolutionary design and resilience of Coscinodiscus sp. frustule, Proc. Natl. Acad. Sci. U.S.A, vol.113, pp.2017-2022

M. B. Araujo, A. E. Rozenfeld, J. A. Berges, C. Bowler, B. R. Green et al., The geographic scaling of biotic interactions The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism, Ecography Science, vol.37, issue.306, pp.406-415, 2004.

P. Assmy, J. Henjes, C. Klaas, and V. Smetacek, Mechanisms determining species dominance in a phytoplankton bloom induced by the iron fertilization experiment EisenEx in the Southern Ocean, Deep Sea Research Part I: Oceanographic Research Papers, vol.54, issue.3, pp.340-362, 2007.
DOI : 10.1016/j.dsr.2006.12.005

P. Assmy, V. Smetacek, M. Montresor, C. Klaas, and J. Henjes, Thick-shelled, grazer-protected diatoms decouple ocean carbon and silicon cycles in the iron-limited Antarctic Circumpolar Current, Proceedings of the National Academy of Sciences, vol.21, issue.5920, pp.20633-20638, 2013.
DOI : 10.1126/science.1167441

S. B. Baines, B. S. Twining, M. A. Brzezinski, J. W. Krause, S. Vogt et al., Significant silicon accumulation by marine picocyanobacteria, Nature Geoscience, vol.104, issue.12, 2012.
DOI : 10.1016/0967-0637(95)93592-3

G. Bateman, B. L. Vanderwal, J. Williams, S. E. , J. et al., Biotic interactions influence the projected distribution of a specialist mammal under climate change, Diversity and Distributions, vol.30, issue.9, pp.886-891, 2012.
DOI : 10.1111/j.1442-9993.2005.01514.x

D. Beisser, N. Graupner, C. Bock, S. Wodniok, L. Grossmann et al., Figure S1: SSU phylogeny, PeerJ, vol.28, issue.1, 2017.
DOI : 10.7717/peerj.2832/supp-2

A. Benoiston, F. M. Ibarbalz, L. Bittner, L. Guidi, O. Jahn et al., The evolution of diatoms and their biogeochemical functions, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.2, issue.1728, 2017.
DOI : 10.1126/science.aac8721

L. Betancor and H. R. Luckarift, Bioinspired enzyme encapsulation for biocatalysis, Trends in Biotechnology, vol.26, issue.10, pp.566-572, 2008.
DOI : 10.1016/j.tibtech.2008.06.009

T. Biard, L. Stemmann, M. Picheral, N. Mayot, P. Vandromme et al., In situ imaging reveals the biomass of giant protists in the global ocean Metalloids: essential, beneficial or toxic? Major intrinsic proteins sort it out, Nature Trends Biochem. Sci, vol.532, issue.33, pp.504-507, 2007.

K. G. Bondoc, J. Heuschele, J. Gillard, W. Vyverman, and G. Pohnert, Selective silicate-directed motility in diatoms, Nature Communications, vol.92, 2016.
DOI : 10.1016/j.ejop.2003.09.001
URL : http://www.nature.com/articles/ncomms10540.pdf

P. Bork, C. Bowler, C. De-vargas, G. Gorsky, E. Karsenti et al., Tara Oceans studies plankton at planetary scale, Science, vol.15, issue.10, pp.873-873, 2015.
DOI : 10.1371/journal.pbio.1001177
URL : https://hal.archives-ouvertes.fr/hal-01258211

C. Bowler, A. E. Allen, J. H. Badger, J. Grimwood, K. Jabbari et al., The Phaeodactylum genome reveals the evolutionary history of diatom genomes A molecular genetic timescale for the diversification of autotrophic stramenopiles (Ochrophyta): substantive underestimation of putative fossil ages, Nature PLoS ONE, vol.456, issue.5, pp.239-244, 2008.

E. Brunner, P. Richthammer, H. Ehrlich, S. Paasch, P. Simon et al., Chitin-Based Organic Networks: An Integral Part of Cell Wall Biosilica in the Diatom Thalassiosira pseudonana, Angewandte Chemie International Edition, vol.142, issue.51, pp.9724-9727, 2009.
DOI : 10.1006/jmre.1999.1896

M. A. Brzezinski, J. W. Krause, S. B. Baines, J. L. Collier, D. C. Ohnemus et al., spp., Journal of Phycology, vol.199, issue.113, pp.764-761, 2017.
DOI : 10.1016/S0009-2541(03)00120-7

R. G. Campbell, E. N. Sherrb, C. J. Ashjian, S. Plourde, B. F. Sherrb et al., Mesozooplankton prey preference and grazing impact in the western Arctic Ocean, Deep Sea Research Part II: Topical Studies in Oceanography, vol.56, issue.17, pp.1274-1289, 2009.
DOI : 10.1016/j.dsr2.2008.10.027

E. M. Carlisle, Silicon in Bone Formation, Silicon and Siliceous Structures in Biological Systems, pp.69-94, 1981.
DOI : 10.1007/978-1-4612-5944-2_4

D. A. Caron, H. Alexander, A. E. Allen, J. M. Archibald, E. V. Armbrust et al., Probing the evolution, ecology and physiology of marine protists using transcriptomics, Nature Reviews Microbiology, vol.55, issue.1, pp.6-20, 2017.
DOI : 10.1525/bio.2009.59.6.5

P. Cermeño, P. G. Falkowski, O. E. Romero, M. F. Schaller, and S. M. Vallina, Continental erosion and the Cenozoic rise of marine diatoms, Proceedings of the National Academy of Sciences, vol.1, issue.4, pp.4239-4244, 2015.
DOI : 10.1016/B978-012370518-1/50016-3

B. L. Cohen, Not armour, but biomechanics, ecological opportunity and increased fecundity as keys to the origin and expansion of the mineralized benthic metazoan fauna, Biological Journal of the Linnean Society, vol.35, issue.4, 2005.
DOI : 10.1007/978-1-4899-2427-8_1

D. J. Conley, P. J. Frings, G. Fontorbe, W. Clymans, J. Stadmark et al., Biosilicification Drives a Decline of Dissolved Si in the Oceans through Geologic Time, Frontiers in Marine Science, vol.187, p.397, 2017.
DOI : 10.1016/j.gca.2016.05.012

J. Cooke and M. R. Leishman, Is plant ecology more siliceous than we realise? Trends Plant Sci, pp.61-68, 2011.
DOI : 10.1016/j.tplants.2010.10.003

Y. Crombet, K. Leblanc, B. Quéguiner, T. Moutin, P. Rimmelin et al., Deep silicon maxima in the stratified oligotrophic Mediterranean Sea, Biogeosciences, vol.8, issue.2, pp.459-475, 2011.
DOI : 10.5194/bg-8-459-2011
URL : https://hal.archives-ouvertes.fr/hal-00700258

W. M. Darley, B. E. Volcani, C. De-la-rocha, M. A. Brzezinski, and M. J. Deniro, Role of silicon in diatom metabolism, Experimental Cell Research, vol.58, issue.2-3, pp.334-342, 1969.
DOI : 10.1016/0014-4827(69)90514-X

C. De-vargas, S. Audic, N. Henry, J. Decelle, F. Mahé et al., Eukaryotic plankton diversity in the sunlit ocean, Science, vol.48, issue.1, 2015.
DOI : 10.1111/j.1529-8817.2012.01150.x

D. Amo, Y. Brzezinski, and M. A. , THE CHEMICAL FORM OF DISSOLVED SI TAKEN UP BY MARINE DIATOMS, Journal of Phycology, vol.35, issue.6, 1999.
DOI : 10.1046/j.1529-8817.1999.3561162.x

R. Derelle, P. López-garcía, H. Timpano, D. Moreira, M. Desouky et al., A Phylogenomic Framework to Study the Diversity and Evolution of Stramenopiles (=Heterokonts), Proc. Natl. Acad. Sci. U.S.A. 99, pp.2890-2898, 2002.
DOI : 10.1101/gr.074492.107
URL : http://europepmc.org/articles/pmc5482393?pdf=render

L. F. Dougherty, S. Johnsen, R. L. Caldwell, M. , and N. J. , A dynamic broadband reflector built from microscopic silica spheres in the 'disco' clam Ctenoides ales, Journal of The Royal Society Interface, vol.213, issue.10, 2014.
DOI : 10.1242/jeb.038117
URL : http://rsif.royalsocietypublishing.org/content/royinterface/11/98/20140407.full.pdf

B. Drescher, R. M. Dillaman, and A. R. Taylor, Coccolithogenesis in Scyphosphaera apsteinii (Prymnesiophyceae), J. Phycol, vol.48, 2012.
DOI : 10.1111/j.1529-8817.2012.01227.x

G. M. Durak, A. R. Taylor, C. E. Walker, I. Probert, C. De-vargas et al., A role for diatom-like silicon transporters in calcifying coccolithophores, Nature Communications, vol.40, 2016.
DOI : 10.1093/molbev/mss075
URL : http://www.nature.com/articles/ncomms10543.pdf

C. A. Durkin, J. A. Koester, S. J. Bender, and E. V. Armbrust, The evolution of silicon transporters in diatoms, Journal of Phycology, vol.157, issue.5, pp.716-734, 2016.
DOI : 10.1016/j.protis.2006.02.004

P. Dvorák, D. A. Casamatta, Á. Poulí?kov, A. Ha?ler, P. Ondrej et al., : 3 billion years of global dominance, Molecular Ecology, vol.16, issue.22, pp.5538-5551, 2014.
DOI : 10.1101/gr.5322306

K. Egan, R. E. Rickaby, K. R. Hendry, and A. N. Halliday, Opening the gateways for diatoms primes Earth for Antarctic glaciation, Earth and Planetary Science Letters, vol.375, pp.34-43, 2013.
DOI : 10.1016/j.epsl.2013.04.030
URL : https://doi.org/10.1016/j.epsl.2013.04.030

D. Eglin, K. L. Shafran, J. Livage, T. Coradin, P. et al., Comparative study of the influence of several silica precursors on collagen self-assembly and of collagen on ???Si??? speciation and condensation, J. Mater. Chem., vol.159, issue.43, 2006.
DOI : 10.1016/S0022-5193(05)80769-6

C. Ehrlich, H. Heinemann, S. Heinemann, C. Simon, P. Tabachnick et al., Nanostructural Organization of Naturally Occurring Composites???Part I: Silica-Collagen-Based Biocomposites, Journal of Nanomaterials, vol.4, issue.4, pp.4220-4230, 2008.
DOI : 10.1098/rsif.2007.0218
URL : http://doi.org/10.1155/2008/623838

H. Ehrlich, M. Krautter, T. Hanke, P. Simon, C. Knieb et al., First evidence of the presence of chitin in skeletons of marine sponges. Part II. Glass sponges (Hexactinellida: Porifera), Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, vol.62, issue.4, pp.473-483, 2007.
DOI : 10.1117/12.568654

H. Ehrlich, M. Maldonado, K. Spindler, C. Eckert, T. Hanke et al., First evidence of chitin as a component of the skeletal fibers of marine sponges. Part I. Verongidae (demospongia: Porifera), Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, vol.6, issue.4, pp.347-356, 2007.
DOI : 10.1017/CBO9780511623547

H. Ensikat, T. Geisler, W. , and M. , A first report of hydroxylated apatite as structural biomineral in Loasaceae ??? plants??? teeth against herbivores, Scientific Reports, vol.1, issue.1, 2016.
DOI : 10.3762/bjnano.5.167
URL : http://www.nature.com/articles/srep26073.pdf

. R. Sci, L. Feng, and W. B. Frommer, Structure and function of SemiSWEET and SWEET sugar transporters, Trends Biochem. Sci, vol.40, pp.480-486, 2015.

Z. V. Finkel and B. Kotrc, Silica Use Through Time: Macroevolutionary Change in the Morphology of the Diatom Fustule, Geomicrobiology Journal, vol.7, issue.6-7, pp.596-608, 2010.
DOI : 10.1126/science.1059412

Z. V. Finkel, M. E. Katz, J. D. Wright, O. M. Schofieid, and P. G. Falkowski, Climatically driven macroevolutionary patterns in the size of marine diatoms over the Cenozoic, Proceedings of the National Academy of Sciences, vol.96, issue.11, pp.8927-8932, 2005.
DOI : 10.1130/0016-7606(1985)96<1407:CG>2.0.CO;2

Z. V. Finkel, K. A. Matheson, K. S. Regan, A. J. Irwin, B. Weissenbacher et al., Genotypic and phenotypic variation in diatom silicification under paleo-oceanographic conditions A cover of glass: first report of biomineralized silicon in a ciliate, Maryna umbrellata (Ciliophora: Colpodea), Geobiology J. Eukaryot. Microbiol, vol.8, issue.56, pp.433-445, 2009.

G. Fontorbe, P. J. Frings, C. L. De-la-rocha, K. R. Hendry, and D. J. Conley, A silicon depleted North Atlantic since the Palaeogene: Evidence from sponge and radiolarian silicon isotopes, Earth and Planetary Science Letters, vol.453, pp.67-77, 2016.
DOI : 10.1016/j.epsl.2016.08.006
URL : https://doi.org/10.1016/j.epsl.2016.08.006

G. Fontorbe, P. J. Frings, C. L. De-la-rocha, K. R. Hendry, D. J. Conley et al., Enrichment of dissolved silica in the deep Equatorial Pacific during the Eocene-Oligocene Size and biomechanic properties of diatom frustules influence food uptake by copepods Marine alga Platymonas sp. accumulates silicon without apparent requirement Diatoms as living photonic crystals, Paleoceanography Mar. Ecol. Prog. Ser. Nature El Rharbl-Kucki, M., and Sumper, M. Appl. Phys. B Lasers Opt, vol.32, issue.78, pp.848-863, 1007.

A. Gal, A. Hirsch, S. Siegel, C. Li, B. Aichmayer et al., Plant Cystoliths: A Complex Functional Biocomposite of Four Distinct Silica and Amorphous Calcium Carbonate Phases, Chemistry - A European Journal, vol.346, issue.33, pp.10262-10270, 2012.
DOI : 10.1016/0168-9002(94)90720-X

M. Garbuzov, S. Reidinger, H. , and S. E. , Interactive effects of plantavailable soil silicon and herbivory on competition between two grass species, 2011.
DOI : 10.1093/aob/mcr230
URL : https://academic.oup.com/aob/article-pdf/108/7/1355/17003283/mcr230.pdf

. Ann and . Bot, , pp.1355-1363

G. F. Gause, EXPERIMENTAL ANALYSIS OF VITO VOLTERRA'S MATHEMATICAL THEORY OF THE STRUGGLE FOR EXISTENCE, Science, vol.79, issue.2036, pp.16-17, 1934.
DOI : 10.1126/science.79.2036.16-a

N. Gong, M. Wiens, H. C. Schröder, E. Mugnaioli, U. Kolb et al., Biosilicification of loricate choanoflagellate: organic composition of the nanotubular siliceous costal strips of Stephanoeca diplocostata, Journal of Experimental Biology, vol.213, issue.20, pp.3575-3585, 2010.
DOI : 10.1242/jeb.048496

R. Gordon, D. Losic, M. A. Tiffany, S. S. Nagy, and F. A. Sterrenburg, The Glass Menagerie: diatoms for novel applications in nanotechnology, Trends in Biotechnology, vol.27, issue.2, pp.116-127, 2009.
DOI : 10.1016/j.tibtech.2008.11.003

N. J. Gotelli, G. R. Graves, R. , and C. , Macroecological signals of species interactions in the Danish avifauna, Proceedings of the National Academy of Sciences, vol.61, issue.4, pp.5030-5035, 2010.
DOI : 10.2307/1935181

D. Gravel, F. Massol, E. Canard, D. Mouillot, N. Mouquet et al., Trophic theory of island biogeography, Ecology Letters, vol.470, issue.10, pp.1010-1016, 2008.
DOI : 10.1038/nature09705
URL : http://chaire-eec.uqar.ca/files/Gravel_al_2011b_EcoLett.pdf

C. Grégoire, W. Rémus-borel, J. Vivancos, C. Labbé, F. Belzile et al., The Plant Journal, vol.21, issue.2, pp.320-330, 2012.
DOI : 10.1105/tpc.109.069831

T. Grenne and J. F. Slack, Paleozoic and Mesozoic silica-rich seawater: Evidence from hematitic chert (jasper) deposits, Geology, vol.31, issue.4, pp.319-322, 2003.
DOI : 10.1130/0091-7613(2003)031<0319:PAMSRS>2.0.CO;2

I. Gunnarsson and S. Arnórsson, Amorphous silica solubility and the thermodynamic properties of H4SiO??4 in the range of 0?? to 350??C at Psat, Geochimica et Cosmochimica Acta, vol.64, issue.13, pp.2295-2307, 2000.
DOI : 10.1016/S0016-7037(99)00426-3

C. E. Hamm, R. Merkel, O. Springer, and P. Jurkojc, Architecture and material properties of diatom shells provide effective mechanical protection, Nature, vol.12, issue.6925, pp.841-843, 2003.
DOI : 10.1016/0168-874X(92)90040-J

C. Hamm and V. Smetacek, Armor: Why, When, and How, Evolution of Primary Producers in the Sea, pp.311-332, 2007.
DOI : 10.1016/B978-012370518-1/50015-1

G. Hardin, The Competitive Exclusion Principle, Science, vol.131, issue.3409, 1960.
DOI : 10.1126/science.131.3409.1292

H. E. Harper and A. H. Knoll, Silica, diatoms, and Cenozoic radiolarian evolution, Geology, vol.3, issue.4, pp.175-177, 1975.
DOI : 10.1130/0091-7613(1975)3<175:SDACRE>2.0.CO;2

, 3<175:SDACRE>2.0.CO, pp.10-1130, 1975.

S. E. Hartley, J. L. Degabriel, and J. Cooke, The ecology of herbivore-induced silicon defences in grasses, Functional Ecology, vol.110, issue.8, pp.1311-1322, 2016.
DOI : 10.1073/pnas.1305848110

H. He, E. J. Veneklaas, J. Kuo, and H. Lambers, Physiological and ecological significance of biomineralization in plants, Trends in Plant Science, vol.19, issue.3, 2014.
DOI : 10.1016/j.tplants.2013.11.002

R. E. Hecky, K. Mopper, P. Kilham, and E. T. Degens, The amino acid and sugar composition of diatom cell-walls, Marine Biology, vol.2, issue.4, pp.323-331, 1973.
DOI : 10.1007/BF00348902

K. R. Hendry, R. , and L. F. , The relationship between silicon isotope fractionation in sponges and silicic acid concentration: Modern and core-top studies of biogenic opal, Geochimica et Cosmochimica Acta, vol.81, 2012.
DOI : 10.1016/j.gca.2011.12.010

K. R. Hendry, L. F. Robinson, J. F. Mcmanus, and J. D. Hays, Silicon isotopes indicate enhanced carbon export efficiency in the North Atlantic during deglaciation, Nature Communications, vol.291, issue.1, pp.3107-3117, 1038.
DOI : 10.1126/science.291.5501.112

M. Hildebrand, K. Dahlin, B. E. Volcani, B. E. Volcani, W. Gassman et al., Characterization of a silicon transporter gene family in Cylindrotheca fusiformis : sequences, expression analysis, and identification of homologs in other diatoms, Molecular and General Genetics MGG, vol.260, issue.5, pp.480-486, 1997.
DOI : 10.1007/s004380050920

J. Hortal, F. De-bello, J. A. Diniz-filho, T. M. Lewinsohn, J. M. Lobo et al., Seven Shortfalls that Beset Large-Scale Knowledge of Biodiversity, Annual Review of Ecology, Evolution, and Systematics, vol.46, issue.1, pp.523-549, 2015.
DOI : 10.1146/annurev-ecolsys-112414-054400

M. Ichinomiya, S. Yoshikawa, M. Kamiya, K. Ohki, S. Takaichi et al., ISOLATION AND CHARACTERIZATION OF PARMALES (HETEROKONTA/HETEROKONTOPHYTA/STRAMENOPILES) FROM THE OYASHIO REGION, WESTERN NORTH PACIFIC1, Journal of Phycology, vol.28, issue.1, pp.144-151, 1979.
DOI : 10.1093/nar/28.23.4698

A. E. Ingalls, K. Whitehead, and M. C. Bridoux, Tinted windows: The presence of the UV absorbing compounds called mycosporine-like amino acids embedded in the frustules of marine diatoms, Geochimica et Cosmochimica Acta, vol.74, issue.1, pp.104-115, 2010.
DOI : 10.1016/j.gca.2009.09.012

K. Itoh, A consideration on feeding habits of planktonic copepods in relation to the structure of their oral parts, Bull. Plankton Soc. Japan, vol.17, pp.1-10, 1970.

E. Karsenti, S. G. Acinas, P. Bork, C. Bowler, D. Vargas et al., A Holistic Approach to Marine Eco-Systems Biology, PLoS Biology, vol.6, issue.10, 2011.
DOI : 10.1371/journal.pbio.1001177.g002
URL : https://hal.archives-ouvertes.fr/hal-00691580

P. J. Keeling, F. Burki, H. M. Wilcox, B. Allam, E. E. Allen et al., The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing, PLoS Biology, vol.9, issue.6, 2014.
DOI : 10.1371/journal.pbio.1001889.s001
URL : https://hal.archives-ouvertes.fr/hal-01109521

R. Keller, C. Ziegler, and D. Schneider, Abstract, Biological Chemistry, vol.395, issue.12, pp.1379-1388, 2014.
DOI : 10.1515/hsz-2014-0224
URL : https://hal.archives-ouvertes.fr/hal-01388984

C. R. Kessenich, E. C. Ruck, A. M. Schurko, N. J. Wickett, and A. J. And-alverson, Transcriptomic Insights into the Life History of Bolidophytes, the Sister Lineage to Diatoms, Journal of Phycology, vol.163, issue.6, pp.977-983, 2014.
DOI : 10.1016/j.protis.2011.08.001

D. L. Kidder and I. Tomescu, Biogenic chert and the Ordovician silica cycle, Palaeogeography, Palaeoclimatology, Palaeoecology, vol.458, 2016.
DOI : 10.1016/j.palaeo.2015.10.013

M. J. Knight, L. Senior, B. Nancolas, S. Ratcliffe, and P. Curnow, Direct evidence of the molecular basis for biological silicon transport, Nature Communications, vol.39, 2016.
DOI : 10.1083/jcb.200612100
URL : http://www.nature.com/articles/ncomms11926.pdf

A. H. Knoll, Biomineralization and evolutionary history, " in Reviews in Mineralogy and Geochemistry: Biomineralization, pp.329-356, 2003.

A. H. Knoll and M. J. Follows, A bottom-up perspective on ecosystem change in Mesozoic oceans, Proceedings of the Royal Society B: Biological Sciences, vol.67, issue.1841, 2016.
DOI : 10.1371/journal.pone.0077349
URL : http://rspb.royalsocietypublishing.org/content/royprsb/283/1841/20161755.full.pdf

A. H. Knoll and B. Kotrc, Protistan Skeletons: A Geologic History of Evolution and Constraint, Evolution of Lightweight Structures, pp.1-16, 2015.
DOI : 10.1007/978-94-017-9398-8_1
URL : https://dash.harvard.edu/bitstream/handle/1/30403697/71123922.pdf?sequence=1

B. Kotrc and A. H. Knoll, Abstract, Paleobiology, vol.41, issue.01, pp.45-67, 2015.
DOI : 10.1017/pab.2014.4

A. Kotzsch, D. Pawolski, A. Milentyev, A. Shevchenko, A. Scheffel et al., Journal of Biological Chemistry, vol.13, issue.10, pp.4982-4997, 2016.
DOI : 10.1016/j.cbpa.2007.10.009

A. Kouchinsky, S. Bengtson, B. Runnegar, C. Skovsted, M. Steiner et al., Chronology of early Cambrian biomineralization, Geological Magazine, vol.210, issue.02, 2011.
DOI : 10.1134/S0031030107040028

M. Kozhemyako, V. B. Veremeichik, G. N. Shkryl, Y. N. Kovalchuk, S. N. Krasokhin et al., Silicatein genes in spiculeforming and nonspicule-forming Pacific demosponges Radiolaria divided into Polycystina and Spasmaria in combined 18S and 28S rDNA phylogeny, Mar. Biotechnol. PLoS ONE, vol.149, issue.6, pp.221-251, 2010.

N. Kröger, R. Deutzmann, C. Bergsdorf, and M. Sumper, Species-specific polyamines from diatoms control silica morphology, Proceedings of the National Academy of Sciences, vol.26, issue.1, pp.14133-14138, 2000.
DOI : 10.1016/0021-9797(68)90272-5

N. Kröger, S. Lorenz, E. Brunner, and M. Sumper, Self-Assembly of Highly Phosphorylated Silaffins and Their Function in Biosilica Morphogenesis, Science, vol.298, issue.5593, pp.584-586, 2002.
DOI : 10.1126/science.1076221

C. Ku, S. Nelson-sathi, M. Roettger, F. L. Sousa, P. J. Lockhart et al., Endosymbiotic origin and differential loss of eukaryotic genes, Nature, vol.110, issue.7566, pp.427-437, 1038.
DOI : 10.1073/pnas.1211371110

Y. Kunitomo, I. Sarashina, M. Iijima, K. Endo, and K. Sashida, Molecular phylogeny of acantharian and polycystine radiolarians based on ribosomal DNA sequences, and some comparisons with data from the fossil record, European Journal of Protistology, vol.42, issue.2, pp.143-153, 2006.
DOI : 10.1016/j.ejop.2006.04.001

D. J. Lahr, T. Bosak, E. Lara, M. , and E. A. , The Phanerozoic diversification of silica-cycling testate amoebae and its possible links to changes in terrestrial ecosystems, PeerJ, vol.24, 2015.
DOI : 10.7717/peerj.1234/supp-1

D. J. Lahr, J. R. Grant, and L. A. Katz, Multigene Phylogenetic Reconstruction of the Tubulinea (Amoebozoa) Corroborates Four of the Six Major Lineages, while Additionally Revealing that Shell Composition Does not Predict Phylogeny in the Arcellinida, Protist, vol.164, issue.3, pp.323-339, 2013.
DOI : 10.1016/j.protis.2013.02.003

D. B. Lazarus, B. Kotrc, G. Wulf, and D. N. Schmidt, Radiolarians decreased silicification as an evolutionary response to reduced Cenozoic ocean silica availability, Proceedings of the National Academy of Sciences, vol.260, issue.1-2, pp.9333-9338, 2009.
DOI : 10.1016/j.palaeo.2007.08.020

D. Lazarus, J. Barron, J. Renaudie, P. Diver, and A. Türke, Cenozoic Planktonic Marine Diatom Diversity and Correlation to Climate Change, PLoS ONE, vol.15, issue.81, 2014.
DOI : 10.1371/journal.pone.0084857.s007
URL : https://doi.org/10.1371/journal.pone.0084857

B. S. Leadbeater, The Choanoflagellates: Evolution, Biology and Ecology, 2015.
DOI : 10.1017/CBO9781139051125

B. S. Leadbeater, Q. Yu, J. Kent, and D. J. Stekel, Three-dimensional images of choanoflagellate loricae, Proceedings of the Royal Society B: Biological Sciences, vol.164, issue.3, pp.3-110844, 2008.
DOI : 10.1007/BF01320814
URL : http://rspb.royalsocietypublishing.org/content/royprsb/276/1654/3.full.pdf

K. Leblanc, A. Leynaert, I. C. Fernandez, P. Rimmelin, T. Moutin et al., A seasonal study of diatom dynamics in the North Atlantic during the POMME experiment (2001): evidence for Si limitation of the spring bloom Silicon cycle in the NW Mediterranean Sea: seasonal study of a coastal oligotrophic site, J. Geophys. Res. Oceanol. Acta, vol.110, issue.2603, pp.339-355, 2003.

M. V. Lebour, The Food of Plankton Organisms, Journal of the Marine Biological Association of the United Kingdom, vol.XVI, issue.04, pp.644-677, 1922.
DOI : 10.1017/S0025315400009681

R. E. Lee, P. K. Kugrens, A. Addad, A. H. Knoll, J. Wang et al., BIOMINERALIZATION OF THE STALKS OF ANTHOPHYSA VEGETANS(CHRYSOPHYCEAE), Journal of Phycology, vol.23, issue.3, pp.591-596, 1989.
DOI : 10.1111/j.1469-8137.1953.tb05213.x

G. Lima-mendez, K. Faust, N. Henry, J. Decelle, S. Colin et al., Determinants of community structure in the global plankton interactome, Science, vol.74, issue.3 Pt 2, pp.1262073-1262083, 2015.
DOI : 10.1103/PhysRevE.74.036104
URL : https://hal.archives-ouvertes.fr/hal-01234200

H. Liu, S. Aris-brosou, I. Probert, D. Vargas, and C. , A Time line of the Environmental Genetics of the Haptophytes, Molecular Biology and Evolution, vol.51, issue.1, pp.161-176, 2010.
DOI : 10.2113/gsmicropal.51.4.267
URL : https://hal.archives-ouvertes.fr/hal-01258256

K. D. Lobel, J. K. West, L. L. Hench, P. J. Lopez, J. Desclés et al., Computational model for protein-mediated biomineralization of the diatom frustule Prospects in diatom research, Mar. Biol. Curr. Opin. Biotechnol, vol.126, issue.16, pp.353-360, 1996.

D. Losic, G. Rosengarten, J. G. Mitchell, and N. H. Voelcker, Pore Architecture of Diatom Frustules: Potential Nanostructured Membranes for Molecular and Particle Separations, Journal of Nanoscience and Nanotechnology, vol.6, issue.4, pp.982-989174, 2006.
DOI : 10.1166/jnn.2006.174

M. Ludwig, J. Lind, E. Miller, R. Wetherbee, and R. H. Macarthur, High molecular mass glycoproteins associated with the siliceous scales and bristles of Mallomonas splendens (Synurophyceae) may be involved in cell surface development and maintenance Geographical Ecology: Patterns in the Distribution of Species, Planta, vol.199, pp.219-228, 1972.

M. Maldonado, Embryonic development of verongid demosponges supports the independent acquisition of spongin skeletons as an alternative to the siliceous skeleton of sponges, Biological Journal of the Linnean Society, vol.47, issue.2, pp.427-447, 2009.
DOI : 10.1080/07924259.2005.9652146

M. Maldonado, M. C. Carmona, and A. Cruzado, Decline in Mesozoic reef-building in sponges explained by silicon limitation, Nature, vol.401, issue.6755, pp.785-788, 1038.
DOI : 10.1038/44560

M. Maldonado, L. Navarro, A. Grasa, A. Gonzalez, I. R. Vaquerizo et al., Silicon uptake by sponges: a twist to understanding nutrient cycling on continental margins Secular change in chert distribution: a reflection of evolving biological participation in the silica cycle, Palaois, vol.4, pp.513-532, 1989.

R. G. Maliva, A. H. Knoll, and B. M. Simonson, Secular change in the Precambrian silica cycle: Insights from chert petrology, Geological Society of America Bulletin, vol.117, issue.7, pp.835-845, 2005.
DOI : 10.1130/B25555.1

S. Malviya, E. Scalco, S. Audic, F. Vincent, A. Veluchamy et al., Insights into global diatom distribution and diversity in the world???s ocean, Proc. Natl. Acad. Sci, pp.1516-1525, 2016.
DOI : 10.1016/0022-5193(66)90013-0
URL : http://www.pnas.org/content/113/11/E1516.full.pdf

S. Mann, Principles and Concepts in Bioinorganic Materials Chemistry, 2001.

F. Marin, M. Smith, Y. Isa, G. Muyzer, and P. Westbroek, Skeletal matrices, muci, and the origin of invertebrate calcification., Proc. Natl. Acad, 1996.
DOI : 10.1073/pnas.93.4.1554

. U. Sci, , pp.1554-1559

A. O. Marron, H. Chappell, S. Ratcliffe, and R. E. Goldstein, A model for the effects of germanium on silica biomineralization in choanoflagellates, Journal of The Royal Society Interface, vol.27, issue.122, 2016.
DOI : 10.1016/j.bone.2008.04.014

A. O. Marron, S. Ratcliffe, G. L. Wheeler, R. E. Goldstein, N. King et al., The Evolution of Silicon Transport in Eukaryotes, Molecular Biology and Evolution, vol.52, issue.12, pp.3226-3248, 2016.
DOI : 10.1016/j.protis.2006.02.004
URL : https://hal.archives-ouvertes.fr/hal-01386826

S. M. Marshall and A. P. Orr, The Biology of a Marine Copepod, Calanus finmarchicus (Gunnerus), 1955.

V. Martin-jézéquel, M. Hildebrand, and M. A. Brzezinski, SILICON METABOLISM IN DIATOMS: IMPLICATIONS FOR GROWTH, Journal of Phycology, vol.36, issue.5, 2000.
DOI : 10.1046/j.1529-8817.2000.00019.x

F. P. Massey, A. R. Ennos, H. , S. U. Sakai, R. Jimbo et al., Silica in grasses as a defence against insect herbivores: contrasting effects on folivores and a phloem feeder, Journal of Animal Ecology, vol.77, issue.2, pp.595-603, 2006.
DOI : 10.2527/jas1971.332466x

J. Michels, J. Vogt, and S. N. Gorb, Tools for crushing diatoms ??? opal teeth in copepods feature a rubber-like bearing composed of resilin, Scientific Reports, vol.38, issue.1, 2012.
DOI : 10.1111/j.1365-2818.2009.03360.x

C. B. Miller, D. M. Nelson, R. R. Guillard, and B. L. Woodward, DANA (COPEPODA, CALANOIDA), The Biological Bulletin, vol.159, issue.2, pp.349-363, 1980.
DOI : 10.2307/1541099

C. B. Miller, D. M. Nelson, C. Weiss, and A. H. Soeldner, Morphogenesis of opal teeth in calanoid copepods, Marine Biology, vol.116, issue.1, pp.91-101, 1990.
DOI : 10.1007/978-1-4612-5944-2_2

A. J. Milligan and F. M. Morel, A Proton Buffering Role for Silica in Diatoms, Science, vol.297, issue.5588, 2002.
DOI : 10.1126/science.1074958

S. Misra and P. N. Froelich, Lithium Isotope History of Cenozoic Seawater: Changes in Silicate Weathering and Reverse Weathering, Science, vol.43, issue.1, pp.818-823, 2012.
DOI : 10.1016/0012-821X(79)90157-2

H. Mizuta, Y. , and H. , Protective function of silicon deposition in Saccharina japonica sporophytes (Phaeophyceae), Journal of Applied Phycology, vol.8, issue.5, pp.1177-1182, 2012.
DOI : 10.1007/s00227-005-0167-2
URL : https://link.springer.com/content/pdf/10.1007%2Fs10811-011-9750-8.pdf

T. Mock, S. J. Daines, R. Geider, S. Collins, M. Metodiev et al., Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes, Global Change Biology, vol.4, issue.1, pp.61-75, 2016.
DOI : 10.1371/journal.pone.0005135
URL : http://onlinelibrary.wiley.com/doi/10.1111/gcb.12983/pdf

T. Mock, M. P. Samanta, V. Iverson, C. Berthiaume, M. Robison et al., Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses, Proceedings of the National Academy of Sciences, vol.6, issue.1, pp.1579-15840707946105, 2008.
DOI : 10.1021/pr0603194

F. O. Monniot, R. Martojai, and C. Monniot, Silica distribution in ascidian ovaries, a tool for systematics, Biochemical Systematics and Ecology, vol.20, issue.6, pp.541-552, 1992.
DOI : 10.1016/0305-1978(92)90008-2

D. Moreira, S. Von-der-heyden, D. Bass, P. López-garcía, E. Chao et al., Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata, Molecular Phylogenetics and Evolution, vol.44, issue.1, pp.255-266, 2007.
DOI : 10.1016/j.ympev.2006.11.001

N. Morueta-holme, B. Blonder, B. Sandel, B. J. Mcgill, R. K. Peet et al., A network approach for inferring species associations from co-occurrence data, Ecography, vol.6, issue.12, pp.1139-1150, 2016.
DOI : 10.1371/journal.pone.0016835

I. Mutsuo, A. Lopes-dos-santos, P. Gourvil, S. Yoshikawa, M. Kamiya et al., Diversity and oceanic distribution of Parmales and Bolidophyceae, a picoplankton group closely related to diatoms, ISMEJ, vol.10, pp.2419-2434, 2015.

T. Nakov, M. Ashworth, and E. C. Theriot, Comparative analysis of the interaction between habitat and growth form in diatoms, The ISME Journal, vol.278, issue.1, pp.246-255, 2014.
DOI : 10.1098/rspb.2010.1459

K. T. Nesbit and R. D. Roer, Journal of Morphology, vol.276, issue.12, pp.1648-1660, 2016.
DOI : 10.1002/jmor.20423

D. Neumann and U. Zur-nieden, Silicon and heavy metal tolerance of higher plants, Phytochemistry, vol.56, issue.7, pp.685-692, 2001.
DOI : 10.1016/S0031-9422(00)00472-6

M. Nomura and K. Ishida, Fine-structural Observations on Siliceous Scale Production and Shell Assembly in the Testate Amoeba Paulinella chromatophora, Protist, vol.167, issue.4, 2016.
DOI : 10.1016/j.protis.2016.05.002

L. W. Parfrey, D. J. Lahr, A. H. Knoll, and L. A. Katz, Estimating the timing of early eukaryotic diversification with multigene molecular clocks, Proceedings of the National Academy of Sciences, vol.91, issue.2, pp.13624-13629, 2011.
DOI : 10.3732/ajb.91.2.214
URL : http://www.pnas.org/content/108/33/13624.full.pdf

T. Platt, G. N. White, . Iii, L. Zhai, S. Sathyendranath et al., , 2009.

, The phenology of phytoplankton blooms: ecosystem indicators from remote sensing, Ecol. Modell, vol.220, pp.3057-3069

S. Polet, C. Berney, J. Fahrni, and J. Pawlowski, Small-Subunit Ribosomal RNA Gene Sequences of Phaeodarea Challenge the Monophyly of Haeckel's Radiolaria, Protist, vol.155, issue.1, pp.53-63, 2004.
DOI : 10.1078/1434461000164

P. Pondaven, M. Gallinari, S. Chollet, E. Bucciarelli, G. Sarthou et al., Grazing-induced Changes in Cell Wall Silicification in a Marine Diatom, Protist, vol.158, issue.1, 2007.
DOI : 10.1016/j.protis.2006.09.002
URL : https://hal.archives-ouvertes.fr/hal-00472048

N. Poulsen and N. Kröger, Journal of Biological Chemistry, vol.13, issue.41, pp.42993-42999, 2004.
DOI : 10.1246/bcsj.71.2017

H. R. Preisig and B. Quéguiner, Siliceous structures and silicification in flagellated protists Iron fertilization and the structure of planktonic communities in high nutrient regions of the Southern Ocean, Protoplasma Deep Sea Res. Part II Top. Stud. Oceanogr, vol.181, issue.90, pp.29-42, 1994.

G. Racki, C. , and F. , Radiolarian palaeoecology and radiolarites: is the present the key to the past?, Earth-Science Reviews, vol.52, issue.1-3, pp.83-120, 2000.
DOI : 10.1016/S0012-8252(00)00024-6

S. Ratcliffe, R. Jugdaohsingh, J. Vivancos, A. Marron, R. Deshmukh et al., Identification of a mammalian silicon transporter, American Journal of Physiology-Cell Physiology, vol.312, issue.5, pp.550-561, 2017.
DOI : 10.1198/016214504000000683

S. Ratti, A. H. Knoll, and M. Giordano, Grazers and Phytoplankton Growth in the Oceans: an Experimental and Evolutionary Perspective, PLoS ONE, vol.421, issue.10, 2013.
DOI : 10.1371/journal.pone.0077349.s014

J. A. Raven, The transport and function of silicon in plants doi: 10.1111/j.1469-185X Non-skeletal biomineralization by eukaryotes: matters of moment and gravity, Biol. Rev. Geomicrobiol. J, vol.58, issue.27, pp.179-207, 1080.

J. A. Raven, W. , and A. M. , The evolution of silicification in diatoms: inescapable sinking and sinking as escape? New Phytol, 2004.

J. Renaudie, Quantifying the Cenozoic marine diatom deposition history: links to the C and Si cycles, Biogeosciences, vol.13, issue.21, pp.6003-6014, 2016.
DOI : 10.5194/bg-13-6003-2016-supplement

R. E. Rickaby, Goldilocks and the three inorganic equilibria: how Earth's chemistry and life coevolve to be nearly in tune, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol.46, issue.7, 2015.
DOI : 10.1111/j.1529-8817.2010.00911.x

J. Romann, J. Valmalette, M. S. Chauton, G. Tranell, M. Einarsrud et al., Wavelength and orientation dependent capture of light by diatom frustule nanostructures, Scientific Reports, vol.37, issue.1, 2015.
DOI : 10.4319/lo.1992.37.8.1680

C. D. Sandgren, S. A. Hall, S. B. Barlow, and G. Luo, SILICEOUS SCALE PRODUCTION IN CHRYSOPHYTE AND SYNUROPHYTE ALGAE. I. EFFECTS OF SILICA-LIMITED GROWTH ON CELL SILICA CONTENT, SCALE MORPHOLOGY, AND THE CONSTRUCTION OF THE SCALE LAYER OF SYNURA PETERSENII1, Journal of Phycology, vol.32, issue.4, pp.675-692, 1996.
DOI : 10.1111/j.0022-3646.1996.00675.x

, Genome-wide transcriptome analyses of silicon metabolism in Phaeodactylum tricornutum reveal the multilevel regulation of silicic acid transporters, PLoS ONE, vol.4

J. Schaller, C. Brackhage, E. Bäucker, and E. G. Dudel, UV-screening of grasses by plant silica layer?, Journal of Biosciences, vol.119, issue.2, pp.413-416, 2013.
DOI : 10.1007/BF02769137

A. Scheffel, N. Poulsen, S. Shian, and N. Kröger, Nanopatterned protein microrings from a diatom that direct silica morphogenesis, Proc. Natl. Acad, 2011.
DOI : 10.1515/bchm2.1960.319.1.38

. U. Sci, , pp.3175-3180

J. M. Scoble and T. Cavalier-smith, Scale evolution, sequence phylogeny, and taxonomy of thaumatomonad Cercozoa: 11 new species and new genera Scutellomonas, Cowlomonas, Thaumatospina and Ovaloplaca, European Journal of Protistology, vol.50, issue.3, pp.270-313, 2014.
DOI : 10.1016/j.ejop.2013.12.005

K. Shimizu, T. Amano, M. R. Bari, J. C. Weaver, J. Arima et al., , 2015.

. Glassin, histidine-rich protein from the siliceous skeletal system of the marine sponge Euplectella, directs silica polycondensation, Proc. Natl. Acad. Sci. U.S.A, vol.112, pp.11449-11454

R. P. Shrestha and M. Hildebrand, ABSTRACT, Eukaryotic Cell, vol.5, issue.1, pp.29-40, 2015.
DOI : 10.1016/j.cell.2009.07.004

R. P. Shrestha, B. Tesson, T. Norden-krichmar, S. Federowicz, M. Hildebrand et al., Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana, BMC Genomics, vol.13, issue.1, pp.499-509, 2012.
DOI : 10.1186/1741-7007-9-34

R. Siever, Silica in the oceans: biological-geochemical interplay, Scientists on Gaia, pp.287-295, 1991.

R. Siever, The silica cycle in the Precambrian, Geochimica et Cosmochimica Acta, vol.56, issue.8, pp.3265-3272, 1992.
DOI : 10.1016/0016-7037(92)90303-Z

K. Simkiss, W. , and K. M. , Biomineralization. Cell Biology and Mineral Deposition, 1989.

P. A. Sims, D. G. Mann, and L. K. Medlin, Evolution of the diatoms: insights from fossil, biological and molecular data, Phycologia, vol.33, issue.5, pp.361-402, 2006.
DOI : 10.2216/i0031-8884-33-3-163.1

T. J. Smayda, The suspension and sinking of phytoplankton in the sea, Oceanogr. Mar. Biol. Annu. Rev, vol.8, pp.353-414, 1970.

J. M. Smith and E. Szathmáry, The Major Transitions in Evolution, 1995.

U. Sommer, The impact of light intensity and daylength on silicate and nitrate competition among marine phytoplankton, Limnology and Oceanography, vol.39, issue.7, 1994.
DOI : 10.4319/lo.1994.39.7.1680

E. D. Sone, S. Weiner, and L. Addadi, Biomineralization of limpet teeth: A cryo-TEM study of the organic matrix and the onset of mineral deposition, Journal of Structural Biology, vol.158, issue.3, pp.428-444, 2007.
DOI : 10.1016/j.jsb.2007.01.001

E. A. Sperling, J. M. Robinson, D. Pisani, and K. J. Peterson, Where's the glass? Biomarkers, molecular clocks, and microRNAs suggest a 200-Myr missing Precambrian fossil record of siliceous sponge spicules, Geobiology, vol.15, issue.1, pp.24-36, 2010.
DOI : 10.1093/oxfordjournals.molbev.a025892

K. Spinde, K. Pachis, I. Antonakaki, S. Paasch, E. Brunner et al., Influence of Polyamines and Related Macromolecules on Silicic Acid Polycondensation: Relevance to ???Soluble Silicon Pools????, Chemistry of Materials, vol.23, issue.21, pp.4676-4687, 1021.
DOI : 10.1021/cm201988g

S. L. Strom, Microbial Ecology of Ocean Biogeochemistry: A Community Perspective, Science, vol.71, issue.12, 2008.
DOI : 10.1128/AEM.71.12.7650-7660.2005

S. L. Strom, E. L. Macri, and B. Olson, Microzooplankton grazing in the coastal Gulf of Alaska: Variations in top-down control of phytoplankton, Limnology and Oceanography, vol.52, issue.4, pp.1480-1494, 2007.
DOI : 10.4319/lo.2007.52.4.1480

M. Sumper and N. Kröger, Silica formation in diatoms: the function of long-chain polyamines and silaffins, J. Mater. Chem., vol.22, issue.14, pp.2059-2065, 2004.
DOI : 10.1038/nbt931

M. Sumper and G. Lehmann, Silica Pattern Formation in Diatoms: Species-Specific Polyamine Biosynthesis, ChemBioChem, vol.24, issue.9, pp.1419-1427, 2006.
DOI : 10.1039/B310201G

M. Sumper, R. Hett, G. Lehmann, and S. Wenzl, A Code for Lysine Modifications of a Silica Biomineralizing Silaffin Protein, Angewandte Chemie International Edition, vol.91, issue.44, pp.8405-8408, 2007.
DOI : 10.1016/0092-8674(93)90673-E

S. Sunagawa, L. P. Coelho, S. Chaffron, J. R. Kultima, K. Labadie et al., Structure and function of the global ocean microbiome, Science, vol.73, issue.16, 2015.
DOI : 10.1128/AEM.00062-07
URL : https://hal.archives-ouvertes.fr/hal-01233742

V. C. Sundar, A. D. Yablon, J. L. Grazul, M. Ilan, and J. Aizenberg, Fibre-optical features of a glass sponge, Nature, vol.424, issue.6951, pp.899-900, 2003.
DOI : 10.1038/424899a

P. Taberlet, E. Coissac, F. Pompanon, C. Brochmann, and E. Willerslev, Towards next-generation biodiversity assessment using DNA metabarcoding, Molecular Ecology, vol.317, issue.8, 2012.
DOI : 10.1111/j.1365-294X.2012.05545.x

, Mol. Ecol, vol.21, pp.2045-2050

Y. Tao, L. S. Cheung, S. Li, J. Eom, L. Chen et al., Structure of a eukaryotic SWEET transporter in a homotrimeric complex, Nature, vol.30, issue.7577, pp.259-263, 2012.
DOI : 10.1093/molbev/mst197

A. R. Taylor, C. Brownlee, W. , and G. , Coccolithophore Cell Biology: Chalking Up Progress, Annual Review of Marine Science, vol.9, issue.1, pp.283-310, 2017.
DOI : 10.1146/annurev-marine-122414-034032

B. Tesson and M. Hildebrand, Dynamics of silica cell wall morphogenesis in the diatom Cyclotella cryptica: Substructure formation and the role of microfilaments, Journal of Structural Biology, vol.169, issue.1, pp.62-74, 2010.
DOI : 10.1016/j.jsb.2009.08.013

B. Tesson and M. Hildebrand, Extensive and Intimate Association of the Cytoskeleton with Forming Silica in Diatoms: Control over Patterning on the Meso- and Micro-Scale, PLoS ONE, vol.8, issue.11, 2010.
DOI : 10.1371/journal.pone.0014300.g014

B. Tesson and M. Hildebrand, Characterization and Localization of Insoluble Organic Matrices Associated with Diatom Cell Walls: Insight into Their Roles during Cell Wall Formation, PLoS ONE, vol.10, issue.4, 2013.
DOI : 10.1371/journal.pone.0061675.s006

B. Tesson, S. J. Lerch, and M. Hildebrand, Characterization of a New Protein Family Associated With the Silica Deposition Vesicle Membrane Enables Genetic Manipulation of Diatom Silica, Scientific Reports, vol.23, issue.1, pp.41598-41615, 2017.
DOI : 10.1016/j.margen.2015.07.002

K. Thamatrakoln, A. J. Alverson, M. K. Hildebrand, and M. Hildebrand, Comparative sequence analysis of diatom silicon transporters: toward a mechanistic model of silicon transport Analysis of Thalassiosira pseudonana silicon transporters indicates distinct regulatory levels and transport activity through the cell cycle, J. Phycol. Eukaryot. Cell, vol.42, issue.6, pp.822-834, 1128.

K. Thamatrakoln and M. Hildebrand, Silicon Uptake in Diatoms Revisited: A Model for Saturable and Nonsaturable Uptake Kinetics and the Role of Silicon Transporters, PLANT PHYSIOLOGY, vol.146, issue.3, pp.1397-1407, 2008.
DOI : 10.1104/pp.107.107094

H. A. Thomsen and J. B. Østergaard, Circumstantial evidence of life history events in loricate choanoflagellates, European Journal of Protistology, vol.58, 2017.
DOI : 10.1016/j.ejop.2016.12.004

D. Tilman, Resource Competition between Plankton Algae: An Experimental and Theoretical Approach, Ecology, vol.58, issue.2, pp.338-348, 1977.
DOI : 10.2307/1935608

D. Tilman, S. S. Kilham, and P. Kilham, Phytoplankton Community Ecology: The Role of Limiting Nutrients, Annual Review of Ecology and Systematics, vol.13, issue.1, 1982.
DOI : 10.1146/annurev.es.13.110182.002025

L. Tirichine, A. Rastogi, and C. Bowler, Recent progress in diatom genomics and epigenomics, Current Opinion in Plant Biology, vol.36, 2017.
DOI : 10.1016/j.pbi.2017.02.001

P. J. Tréguer, D. Rocha, and C. L. , The World Ocean Silica Cycle, Annual Review of Marine Science, vol.5, issue.1, pp.477-501, 2013.
DOI : 10.1146/annurev-marine-121211-172346

H. M. Van-tol, A. J. Irwin, and Z. V. Finkel, Macroevolutionary trends in silicoflagellate skeletal morphology: the costs and benefits of silicification, Paleobiology, vol.18, issue.03, pp.391-402, 2012.
DOI : 10.4319/lo.2010.55.5.2001

P. E. Vandeventer, J. Mejia, A. Nadim, M. S. Johal, A. J. Niemz et al., DNA Adsorption to and Elution from Silica Surfaces: Influence of Amino Acid Buffers, The Journal of Physical Chemistry B, vol.117, issue.37, pp.10742-10749, 2013.
DOI : 10.1021/jp405753m

J. C. Weaver, J. Aizenberg, G. E. Fantner, D. Kisailus, A. Woesz et al., Hierarchical assembly of the siliceous skeletal lattice of the hexactinellid sponge Euplectella aspergillum, Journal of Structural Biology, vol.158, issue.1, pp.93-106, 2007.
DOI : 10.1016/j.jsb.2006.10.027

R. G. Weich, P. Lundberg, H. J. Vogel, and P. Jensén, Phosphorus-31 NMR Studies of Cell Wall-Associated Calcium-Phosphates in Ulva lactuca, PLANT PHYSIOLOGY, vol.90, issue.1, pp.230-236, 1989.
DOI : 10.1104/pp.90.1.230
URL : http://www.plantphysiol.org/content/plantphysiol/90/1/230.full.pdf

S. Wenzl, R. Hett, P. Richthammer, and M. Sumper, Silacidins: Highly Acidic Phosphopeptides from Diatom Shells Assist in Silica Precipitation In Vitro, Angewandte Chemie International Edition, vol.282, issue.1, pp.1729-1732, 2008.
DOI : 10.1074/mcp.M500174-MCP200

A. Williams, C. Lüter, and M. Cusack, The Nature of Siliceous Mosaics Forming the First Shell of the Brachiopod Discinisca, Journal of Structural Biology, vol.134, issue.1, pp.25-344366, 2001.
DOI : 10.1006/jsbi.2001.4366

R. Wood, A. Y. Ivantsov, and A. Y. Zhuravlev, First macrobiota biomineralization was environmentally triggered, Proceedings of the Royal Society B: Biological Sciences, vol.54, issue.03, 2017.
DOI : 10.1016/j.cub.2015.09.066
URL : http://europepmc.org/articles/pmc5378091?pdf=render

K. Yamada, S. Yoshikawa, M. Ichinomiya, A. Kuwata, M. Kamiya et al., Effects of Silicon-Limitation on Growth and Morphology of Triparma laevis NIES-2565 (Parmales, Heterokontophyta), PLoS ONE, vol.68, issue.7, 2014.
DOI : 10.1371/journal.pone.0103289.s001
URL : https://doi.org/10.1371/journal.pone.0103289

S. Yamanaka, R. Yano, H. Usami, N. Hayashida, M. Ohguchi et al., Optical properties of diatom silica frustule with special reference to blue light, Journal of Applied Physics, vol.201, issue.7, 2008.
DOI : 10.1103/PhysRevB.67.073106

M. Ye, Y. Song, J. Long, R. Wang, S. R. Baerson et al., Priming of jasmonate-mediated antiherbivore defense responses in rice by silicon, Proceedings of the National Academy of Sciences, vol.18, issue.1, pp.3631-3639, 2013.
DOI : 10.1080/00103628709367893
URL : http://www.pnas.org/content/110/38/E3631.full.pdf

M. Yoshida, M. H. Noël, T. Nakayama, T. Naganuma, and I. Inouye, A Haptophyte Bearing Siliceous Scales: Ultrastructure and Phylogenetic Position of Hyalolithus neolepis gen. et sp. nov. (Prymnesiophyceae, Haptophyta), Protist, vol.157, issue.2, pp.213-234, 2006.
DOI : 10.1016/j.protis.2006.02.004

S. Zhang, H. Liu, Y. Ke, L. , and B. , Effect of the Silica Content of Diatoms on Protozoan Grazing, Frontiers in Marine Science, vol.549, 2017.
DOI : 10.1016/j.marpolbul.2017.06.025

P. Zhao, W. Gu, S. Wu, A. Huang, L. He et al., Silicon enhances the growth of Phaeodactylum tricornutum Bohlin under green light and low temperature, Scientific Reports, vol.406, issue.1, pp.3958-3968, 1038.
DOI : 10.1016/j.gene.2007.05.022
URL : http://www.nature.com/articles/srep03958.pdf

V. V. Zlatogursky, There and Back Again: Parallel Evolution of Cell Coverings in Centrohelid Heliozoans, Protist, vol.167, issue.1, pp.51-66, 2016.
DOI : 10.1016/j.protis.2015.12.002

, Conflict of Interest Statement: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest

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