H. Adam, S. Jouannic, F. Morcillo, F. Richaud, Y. Duval et al., MADS Box Genes in Oil Palm (Elaeis guineensis): Patterns in the Evolution of the SQUAMOSA, DEFICIENS, GLOBOSA, AGAMOUS, and SEPALLATA Subfamilies, Journal of Molecular Evolution, vol.169, issue.1, pp.15-31, 2006.
DOI : 10.1007/s00239-005-0333-7

H. Adam, S. Jouannic, F. Morcillo, J. Verdeil, Y. Duval et al., Determination of Flower Structure in Elaeis guineensis: Do Palms use the Same Homeotic Genes as Other Species?, Annals of Botany, vol.100, issue.1, pp.1-12, 2007.
DOI : 10.1093/aob/mcm027

H. Adam, S. Jouannic, Y. Orieux, F. Morcillo, F. Richaud et al., Functional characterization of MADS box genes involved in the determination of oil palm flower structure, Journal of Experimental Botany, vol.58, issue.6, pp.1245-1259, 2007.
DOI : 10.1093/jxb/erl263

S. Altschul, W. Gish, W. Miller, E. Myers, and D. Lipman, Basic local alignment search tool, Journal of Molecular Biology, vol.215, issue.3, pp.403-410, 1990.
DOI : 10.1016/S0022-2836(05)80360-2

Y. Arango and K. Heise, Tocopherol synthesis from homogentisate in Capsicum anuum L. (yellow pepper) chromoplast membranes: evidence for tocopherol cyclase, Biochemical Journal, vol.336, issue.3, pp.531-533, 1998.
DOI : 10.1042/bj3360531

X. Argout, O. Fouet, P. Wincker, K. Gramacho, T. Legavre et al., Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions, BMC Genomics, vol.9, issue.1, p.512, 2008.
DOI : 10.1186/1471-2164-9-512

S. Audic and J. Claverie, The significance of digital gene expression profiles, Genome Res, vol.7, pp.986-995, 1997.

M. Auldridge, A. Block, J. Vogel, C. Dabney-smith, I. Mila et al., Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates the divergent roles of this multifunctional enzyme family, The Plant Journal, vol.13, issue.6, pp.982-993, 2006.
DOI : 10.1111/j.1365-313X.2006.02666.x

M. Auldridge, D. Mccarty, and H. Klee, Plant carotenoid cleavage oxygenases and their apocarotenoid products, Current Opinion in Plant Biology, vol.9, issue.3, pp.315-321, 2006.
DOI : 10.1016/j.pbi.2006.03.005

G. Banilas, M. Karampelias, I. Makariti, A. Kourti, and P. Hatzopoulos, The olive DGAT2 gene is developmentally regulated and shares overlapping but distinct expression patterns with DGAT1, Journal of Experimental Botany, vol.62, issue.2, pp.521-532, 2011.
DOI : 10.1093/jxb/erq286

C. Barry and J. Giovannoni, From The Cover: Ripening in the tomato Green-ripe mutant is inhibited by ectopic expression of a protein that disrupts ethylene signaling, Proceedings of the National Academy of Sciences, vol.103, issue.20, pp.7923-7928, 2006.
DOI : 10.1073/pnas.0602319103

C. Barry, M. Llop-tous, and D. Grierson, The Regulation of 1-Aminocyclopropane-1-Carboxylic Acid Synthase Gene Expression during the Transition from System-1 to System-2 Ethylene Synthesis in Tomato, Plant Physiology, vol.123, issue.3, pp.979-986, 2000.
DOI : 10.1104/pp.123.3.979

P. Bates, T. Durrett, J. Ohlrogge, and M. Pollard, Analysis of Acyl Fluxes through Multiple Pathways of Triacylglycerol Synthesis in Developing Soybean Embryos, PLANT PHYSIOLOGY, vol.150, issue.1, pp.55-72, 2009.
DOI : 10.1104/pp.109.137737

S. Baud and L. Lepiniec, Regulation of de novo fatty acid synthesis in maturing oilseeds of Arabidopsis, Plant Physiology and Biochemistry, vol.47, issue.6, pp.448-455, 2009.
DOI : 10.1016/j.plaphy.2008.12.006

S. Baud and L. Lepiniec, Physiological and developmental regulation of seed oil production, Progress in Lipid Research, vol.49, issue.3, pp.235-249, 2010.
DOI : 10.1016/j.plipres.2010.01.001

URL : https://hal.archives-ouvertes.fr/hal-01203879

S. Baud, M. Mendoza, A. To, E. Harscoë-t, L. Lepiniec et al., WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis, The Plant Journal, vol.2, issue.5, pp.825-838, 2007.
DOI : 10.1111/j.1365-313X.2007.03092.x

S. Baud, S. Wuillè-me, A. To, C. Rochat, and L. Lepiniec, Role of WRINKLED1 in the transcriptional regulation of glycolytic and fatty acid biosynthetic genes in Arabidopsis, The Plant Journal, vol.9, issue.6, pp.933-947, 2009.
DOI : 10.1111/j.1365-313X.2009.04011.x

A. Becker and G. Theissen, The major clades of MADS-box genes and their role in the development and evolution of flowering plants, Molecular Phylogenetics and Evolution, vol.29, issue.3, pp.464-489, 2003.
DOI : 10.1016/S1055-7903(03)00207-0

N. Blü-thgen, K. Brand, B. Cajavec, M. Swat, H. Herzel et al., Biological profiling of gene groups utilizing Gene Ontology, Genome Inform, vol.16, pp.106-115, 2005.

B. Boeckmann, A. Bairoch, R. Apweiler, M. Blatter, A. Estreicher et al., The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003, Nucleic Acids Research, vol.31, issue.1, pp.365-370, 2003.
DOI : 10.1093/nar/gkg095

P. Boss, E. Sensi, C. Hua, C. Davies, and M. Thomas, Cloning and characterisation of grapevine (Vitis vinifera L.) MADS-box genes expressed during inflorescence and berry development, Plant Science, vol.162, issue.6, pp.887-895, 2002.
DOI : 10.1016/S0168-9452(02)00034-1

P. Boss, M. Vivier, S. Matsumoto, I. Dry, and M. Thomas, A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGA- MOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development, Plant Molecular Biology, vol.45, issue.5, pp.541-553, 2001.
DOI : 10.1023/A:1010634132156

E. Valle and E. Zabaleta, MADS-box genes expressed during tomato seed and fruit development, Plant Mol Biol, vol.52, pp.801-815, 2003.

C. Cazzonelli, A. Cuttriss, S. Cossetto, W. Pye, P. Crisp et al., Regulation of Carotenoid Composition and Shoot Branching in Arabidopsis by a Chromatin Modifying Histone Methyltransferase, SDG8, THE PLANT CELL ONLINE, vol.21, issue.1, pp.39-53, 2009.
DOI : 10.1105/tpc.108.063131

C. Cazzonelli and B. Pogson, Source to sink: regulation of carotenoid biosynthesis in plants, Trends in Plant Science, vol.15, issue.5, pp.266-274, 2010.
DOI : 10.1016/j.tplants.2010.02.003

A. Cernac and C. Benning, WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis, The Plant Journal, vol.129, issue.Suppl., pp.575-585, 2004.
DOI : 10.1111/j.1365-313X.2004.02235.x

Y. Chen, F. Li, and E. Wurtzel, Isolation and Characterization of the Z-ISO Gene Encoding a Missing Component of Carotenoid Biosynthesis in Plants, PLANT PHYSIOLOGY, vol.153, issue.1, pp.66-79, 2010.
DOI : 10.1104/pp.110.153916

C. Chervin, A. El-kereamy, J. Roustan, A. Latche, J. Lamon et al., Ethylene seems required for the berry development and ripening in grape, a non-climacteric fruit, Plant Science, vol.167, issue.6, pp.1301-1305, 2004.
DOI : 10.1016/j.plantsci.2004.06.026

URL : https://hal.archives-ouvertes.fr/hal-00467128

C. Chervin, A. Tira-umphon, N. Terrier, M. Zouine, D. Severac et al., Stimulation of the grape berry expansion by ethylene and effects on related gene transcripts, over the ripening phase, Physiologia Plantarum, vol.5, issue.3, pp.534-546, 2008.
DOI : 10.1111/j.1399-3054.2008.01158.x

S. Chiwocha, S. Abrams, S. Ambrose, A. Cutler, M. Loewen et al., L.) seeds, The Plant Journal, vol.39, issue.3, pp.405-417, 2003.
DOI : 10.1046/j.1365-313X.2003.01800.x

M. Chung, J. Vrebalov, R. Alba, J. Lee, R. Mcquinn et al., A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening, The Plant Journal, vol.52, issue.6, pp.936-947, 2010.
DOI : 10.1111/j.1365-313X.2010.04384.x

B. Cochard, B. Adon, S. Rekima, N. Billotte, D. De-chenon et al., Geographic and genetic structure of African oil palm diversity suggests new approaches to breeding, Tree Genetics & Genomes, vol.5, issue.2, pp.493-504, 2009.
DOI : 10.1007/s11295-009-0203-3

B. Coombe and C. Hale, The Hormone Content of Ripening Grape Berries and the Effects of Growth Substance Treatments, PLANT PHYSIOLOGY, vol.51, issue.4, pp.629-634, 1973.
DOI : 10.1104/pp.51.4.629

C. Davies, P. Boss, and S. Robinson, Treatment of Grape Berries, a Nonclimacteric Fruit with a Synthetic Auxin, Retards Ripening and Alters the Expression of Developmentally Regulated Genes, Plant Physiology, vol.115, issue.3, pp.1155-1161, 1997.
DOI : 10.1104/pp.115.3.1155

L. Deluc, J. Grimplet, M. Wheatley, R. Tillett, D. Quilici et al., Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development, BMC Genomics, vol.8, issue.1, p.429, 2007.
DOI : 10.1186/1471-2164-8-429

A. Dereeper, V. Guignon, G. Blanc, S. Audic, S. Buffet et al., Phylogeny.fr: robust phylogenetic analysis for the non-specialist, Nucleic Acids Research, vol.36, issue.Web Server, pp.465-469, 2008.
DOI : 10.1093/nar/gkn180

URL : https://hal.archives-ouvertes.fr/lirmm-00324099

M. Eisen, P. Spellman, P. Brown, and D. Botstein, Cluster analysis and display of genome-wide expression patterns, Proceedings of the National Academy of Sciences, vol.95, issue.25, pp.14863-14868, 1998.
DOI : 10.1073/pnas.95.25.14863

T. Elitzur, J. Vrebalov, J. Giovannoni, E. Goldschmidt, and H. Friedman, The regulation of MADS-box gene expression during ripening of banana and their regulatory interaction with ethylene, Journal of Experimental Botany, vol.61, issue.5, pp.1523-1535, 2010.
DOI : 10.1093/jxb/erq017

I. El-sharkawy, S. Sherif, I. Mila, M. Bouzayen, and S. Jayasankar, Molecular characterization of seven genes encoding ethylene-responsive transcriptional factors during plum fruit development and ripening, Journal of Experimental Botany, vol.60, issue.3, 2009.
DOI : 10.1093/jxb/ern354

J. Felsenstein, Confidence Limits on Phylogenies: An Approach Using the Bootstrap, Evolution, vol.39, issue.4, pp.783-791, 1985.
DOI : 10.2307/2408678

N. Focks and C. Benning, : A Novel, Low-Seed-Oil Mutant of Arabidopsis with a Deficiency in the Seed-Specific Regulation of Carbohydrate Metabolism, Plant Physiology, vol.118, issue.1, pp.91-101, 1998.
DOI : 10.1104/pp.118.1.91

P. Fraser, M. Truesdale, C. Bird, W. Schuch, and P. Bramley, Carotenoid Biosynthesis during Tomato Fruit Development (Evidence for Tissue-Specific Gene Expression), Plant Physiology, vol.105, issue.1, pp.405-413, 1994.
DOI : 10.1104/pp.105.1.405

G. Gambetta, M. Matthews, T. Shaghasi, A. Mcelrone, and S. Castellarin, Sugar and abscisic acid signaling orthologs are activated at the onset of ripening in grape, Planta, vol.34, issue.12, pp.219-234, 2010.
DOI : 10.1007/s00425-010-1165-2

G. Gillaspy, H. Ben-david, and W. Gruissem, Fruits: A Developmental Perspective, THE PLANT CELL ONLINE, vol.5, issue.10, pp.1439-1451, 1993.
DOI : 10.1105/tpc.5.10.1439

E. Gimé-nez, B. Pineda, J. Capel, M. Antó-n, A. Ataré-s et al., Functional Analysis of the Arlequin Mutant Corroborates the Essential Role of the ARLEQUIN/TAGL1 Gene during Reproductive Development of Tomato, PLoS ONE, vol.126, issue.12, p.14427, 2010.
DOI : 10.1371/journal.pone.0014427.s006

J. Giovannoni, Genetic Regulation of Fruit Development and Ripening, THE PLANT CELL ONLINE, vol.16, issue.suppl_1, pp.170-180, 2004.
DOI : 10.1105/tpc.019158

J. Giovannoni, Fruit ripening mutants yield insights into ripening control, Current Opinion in Plant Biology, vol.10, issue.3, pp.283-289, 2007.
DOI : 10.1016/j.pbi.2007.04.008

S. Gö-tz, J. García-gó-mez, J. Terol, T. Williams, S. Nagaraj et al., High-throughput functional annotation and data mining with the Blast2GO suite, Nucleic Acids Research, vol.36, issue.10, pp.3420-3435, 2008.
DOI : 10.1093/nar/gkn176

L. Hileman, J. Sundstrom, A. Litt, M. Chen, T. Shumba et al., Molecular and Phylogenetic Analyses of the MADS-Box Gene Family in Tomato, Molecular Biology and Evolution, vol.23, issue.11, pp.2245-2258, 2006.
DOI : 10.1093/molbev/msl095

J. Hirschberg, Carotenoid biosynthesis in flowering plants, Current Opinion in Plant Biology, vol.4, issue.3, pp.210-218, 2001.
DOI : 10.1016/S1369-5266(00)00163-1

C. Howitt and B. Pogson, Carotenoid accumulation and function in seeds and non-green tissues, Plant, Cell and Environment, vol.179, issue.3, pp.435-445, 2006.
DOI : 10.1021/jf049214g

S. Hunter, R. Apweiler, T. Attwood, A. Bairoch, A. Bateman et al., InterPro: the integrative protein signature database, Nucleic Acids Research, vol.37, issue.Database, pp.211-215, 2009.
DOI : 10.1093/nar/gkn785

URL : https://hal.archives-ouvertes.fr/hal-01214141

J. Ikemefuna and I. Adamson, Chlorophyll and carotenoid changes in ripening palm fruit, Elaeis guine??nsis, Phytochemistry, vol.23, issue.7, pp.1413-1415, 1984.
DOI : 10.1016/S0031-9422(00)80476-8

M. Itkin, H. Seybold, D. Breitel, I. Rogachev, S. Meir et al., TOMATO AGAMOUS-LIKE??????1 is a component of the fruit ripening regulatory network, The Plant Journal, vol.26, issue.6, pp.1081-1095, 2009.
DOI : 10.1111/j.1365-313X.2009.04064.x

Y. Ito, M. Kitagawa, N. Ihashi, K. Yabe, J. Kimbara et al., mutation effect for the tomato fruit-ripening regulator RIN, The Plant Journal, vol.89, issue.Suppl., pp.212-223, 2008.
DOI : 10.1111/j.1365-313X.2008.03491.x

L. Jaakola, M. Poole, M. Jones, K. Mä-rä-inen-karppinen, T. Koskimä-ki et al., A SQUAMOSA MADS Box Gene Involved in the Regulation of Anthocyanin Accumulation in Bilberry Fruits, PLANT PHYSIOLOGY, vol.153, issue.4, pp.1619-1629, 2010.
DOI : 10.1104/pp.110.158279

T. Joë-t, A. Laffargue, J. Salmona, S. Doulbeau, F. Descroix et al., Metabolic pathways in tropical dicotyledonous albuminous seeds: Coffea arabica as a case study, New Phytologist, vol.380, issue.1, pp.146-162, 2009.
DOI : 10.1111/j.1469-8137.2008.02742.x

D. Jones, W. Taylor, and J. Thornton, The rapid generation of mutation data matrices from protein sequences, Bioinformatics, vol.8, issue.3, pp.275-282, 1992.
DOI : 10.1093/bioinformatics/8.3.275

E. Josse, A. Simkin, J. Gaffé, A. Labouré, M. Kuntz et al., A Plastid Terminal Oxidase Associated with Carotenoid Desaturation during Chromoplast Differentiation, Plant Physiology, vol.123, issue.4, pp.1427-1436, 2000.
DOI : 10.1104/pp.123.4.1427

S. Khemvong and W. Suvachittanont, Molecular cloning and expression of a cDNA encoding 1-deoxy-d-xylulose-5-phosphate synthase from oil palm Elaeis guineensis Jacq., Plant Science, vol.169, issue.3, pp.571-578, 2005.
DOI : 10.1016/j.plantsci.2005.05.001

A. Laffargue, A. De-kochko, and S. Dussert, Development of solid-phase extraction and methylation procedures to analyse free fatty acids in lipid-rich seeds, Plant Physiology and Biochemistry, vol.45, issue.3-4, pp.250-257, 2007.
DOI : 10.1016/j.plaphy.2007.01.012

R. Li, K. Yu, and D. Hildebrand, DGAT1, DGAT2 and PDAT Expression in Seeds and Other Tissues of Epoxy and Hydroxy Fatty Acid Accumulating Plants, Lipids, vol.69, issue.2, pp.145-157, 2010.
DOI : 10.1007/s11745-010-3385-4

Y. Li, J. K. Zhu, Z. , and Y. J. , STEPWISE ORIGIN AND FUNCTIONAL DIVERSIFICATION OF THE AFL SUBFAMILY B3 GENES DURING LAND PLANT EVOLUTION, Journal of Bioinformatics and Computational Biology, vol.08, issue.supp01, 2010.
DOI : 10.1142/S0219720010005129

Y. Li-beisson, B. Shorrosh, F. Beisson, M. Andersson, V. Arondel et al., Acyl-lipid metabolism . The Arabidopsis Book 8: e0999, 2010.

Z. Lin, Y. Hong, M. Yin, C. Li, K. Zhang et al., A tomato HD-Zip homeobox protein, LeHB-1, plays an important role in floral organogenesis and ripening, The Plant Journal, vol.26, issue.5, pp.301-310, 2008.
DOI : 10.1111/j.1365-313X.2008.03505.x

J. Liu, W. Hua, G. Zhan, F. Wei, X. Wang et al., Increasing seed mass and oil content in transgenic Arabidopsis by the overexpression of wri1-like gene from Brassica napus, Plant Physiology and Biochemistry, vol.48, issue.1, pp.9-15, 2010.
DOI : 10.1016/j.plaphy.2009.09.007

J. Liu, B. Xu, L. Hu, M. Li, W. Su et al., Involvement of a banana MADS-box transcription factor gene in ethylene-induced fruit ripening, Plant Cell Reports, vol.37, issue.1, pp.103-111, 2009.
DOI : 10.1007/s00299-008-0613-y

Y. Liu, S. Roof, Z. Ye, C. Barry, A. Van-tuinen et al., Manipulation of light signal transduction as a means of modifying fruit nutritional quality in tomato, Proceedings of the National Academy of Sciences, vol.101, issue.26, pp.9897-9902, 2004.
DOI : 10.1073/pnas.0400935101

A. Lopez, V. Eck, J. Conlin, B. Paolillo, D. et al., Effect of the cauliflower Or transgene on carotenoid accumulation and chromoplast formation in transgenic potato tubers, Journal of Experimental Botany, vol.59, issue.2, pp.213-223, 2008.
DOI : 10.1093/jxb/erm299

C. Lu, Z. Xin, Z. Ren, M. Miquel, and J. Browse, An enzyme regulating triacylglycerol composition is encoded by the ROD1 gene of Arabidopsis, Proceedings of the National Academy of Sciences, vol.106, issue.44, pp.18837-18842, 2009.
DOI : 10.1073/pnas.0908848106

S. Lu and L. Li, Carotenoid Metabolism: Biosynthesis, Regulation, and Beyond, Journal of Integrative Plant Biology, vol.49, issue.7, pp.778-785, 2008.
DOI : 10.1111/j.1744-7909.2008.00708.x

S. Lu, V. Eck, J. Zhou, X. Lopez, A. et al., The Cauliflower Or Gene Encodes a DnaJ Cysteine-Rich Domain-Containing Protein That Mediates High Levels of ??-Carotene Accumulation, THE PLANT CELL ONLINE, vol.18, issue.12, pp.3594-3605, 2006.
DOI : 10.1105/tpc.106.046417

D. Maass, J. Arango, F. Wü-st, P. Beyer, and R. Welsch, Carotenoid Crystal Formation in Arabidopsis and Carrot Roots Caused by Increased Phytoene Synthase Protein Levels, PLoS ONE, vol.145, issue.4, p.6373, 2009.
DOI : 10.1371/journal.pone.0006373.s003

K. Maeo, T. Tokuda, A. Ayame, N. Mitsui, T. Kawai et al., binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis, The Plant Journal, vol.19, issue.3, pp.476-487, 2009.
DOI : 10.1111/j.1365-313X.2009.03967.x

K. Manning, M. Tör, M. Poole, Y. Hong, A. Thompson et al., A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening, Nature Genetics, vol.14, issue.8, pp.948-952, 2006.
DOI : 10.1093/bioinformatics/18.11.1427

T. Mituyama, K. Yamada, E. Hattori, H. Okida, Y. Ono et al., The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs, Nucleic Acids Research, vol.37, issue.Database, pp.89-92, 2006.
DOI : 10.1093/nar/gkn805

J. Mu, H. Tan, Q. Zheng, F. Fu, Y. Liang et al., LEAFY COTYLEDON1 Is a Key Regulator of Fatty Acid Biosynthesis in Arabidopsis, PLANT PHYSIOLOGY, vol.148, issue.2, pp.1042-1054, 2008.
DOI : 10.1104/pp.108.126342

D. Murphy, Oil palm: future prospects for yield and quality improvements, Lipid Technology, vol.4, issue.11??????12, pp.257-260, 2009.
DOI : 10.1002/lite.200900067

A. Mustilli, F. Fenzi, R. Ciliento, F. Alfano, and C. Bowler, Phenotype of the Tomato high pigment-2 Mutant Is Caused by a Mutation in the Tomato Homolog of DEETIOLATED1, THE PLANT CELL ONLINE, vol.11, issue.2, pp.145-157, 1999.
DOI : 10.1105/tpc.11.2.145

T. Nakano, K. Suzuki, T. Fujimura, and H. Shinshi, Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice, PLANT PHYSIOLOGY, vol.140, issue.2, pp.411-432, 2006.
DOI : 10.1104/pp.105.073783

A. Nakatsuka, S. Murachi, H. Okunishi, S. Shiomi, R. Nakano et al., Differential Expression and Internal Feedback Regulation of 1-Aminocyclopropane-1-Carboxylate Synthase, 1-Aminocyclopropane-1-Carboxylate Oxidase, and Ethylene Receptor Genes in Tomato Fruit during Development and Ripening, Plant Physiology, vol.118, issue.4, pp.1295-1305, 1998.
DOI : 10.1104/pp.118.4.1295

A. Nakkaew, W. Chotigeat, T. Eksomtramage, and A. Phongdara, Cloning and expression of a plastid-encoded subunit, beta-carboxyltransferase gene (accD) and a nuclear-encoded subunit, biotin carboxylase of acetyl-CoA carboxylase from oil palm (Elaeis guineensis Jacq.), Plant Science, vol.175, issue.4, pp.497-504, 2008.
DOI : 10.1016/j.plantsci.2008.05.023

N. Ebongue, G. Dhouib, R. Carriè-re, F. , A. Zollo et al., Assaying lipase activity from oil palm fruit (Elaeis??guineensis Jacq.) mesocarp, Plant Physiology and Biochemistry, vol.44, issue.10, pp.611-617, 2006.
DOI : 10.1016/j.plaphy.2006.09.006

A. Olsen, H. Ernst, L. Leggio, and K. Skriver, NAC transcription factors: structurally distinct, functionally diverse, Trends in Plant Science, vol.10, issue.2, pp.79-87, 2005.
DOI : 10.1016/j.tplants.2004.12.010

A. Othman, C. Lazarus, T. Fraser, and K. Stobart, Cloning of a palmitoyl-acyl carrier protein thioesterase from oil palm, Biochemical Society Transactions, vol.28, issue.6, pp.619-622, 2000.
DOI : 10.1042/bst0280619

I. Pan, R. Mcquinn, J. Giovannoni, and V. Irish, Functional diversification of AGAMOUS lineage genes in regulating tomato flower and fruit development, Journal of Experimental Botany, vol.61, issue.6, pp.1795-1806, 2010.
DOI : 10.1093/jxb/erq046

G. Pertea, X. Huang, F. Liang, V. Antonescu, R. Sultana et al., TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets, Bioinformatics, vol.19, issue.5, pp.651-652, 2003.
DOI : 10.1093/bioinformatics/btg034

M. Poupin, F. Federici, C. Medina, J. Matus, T. Timmermann et al., Isolation of the three grape sub-lineages of B-class MADS-box TM6, PISTILLATA and APETALA3 genes which are differentially expressed during flower and fruit development, Gene, vol.404, issue.1-2, pp.10-24, 2007.
DOI : 10.1016/j.gene.2007.08.005

B. Pouvreau, S. Baud, V. Vernoud, V. Morin, G. Gendrot et al., Duplicate Maize Wrinkled1 Transcription Factors Activate Target Genes Involved in Seed Oil Biosynthesis, PLANT PHYSIOLOGY, vol.156, issue.2, 2011.
DOI : 10.1104/pp.111.173641

URL : https://hal.archives-ouvertes.fr/hal-01000162

U. Ramli, D. Baker, P. Quant, and J. Harwood, Use of control analysis to study the regulation of plant lipid biosynthesis, Biochemical Society Transactions, vol.30, issue.6, pp.1043-1046, 2002.
DOI : 10.1042/bst0301043

U. Ramli, J. Salas, P. Quant, and J. Harwood, (oilpalm), New Phytologist, vol.30, issue.2, pp.330-339, 2009.
DOI : 10.1111/j.1469-8137.2009.02962.x

O. Rasid, W. N. Syuhada, W. , N. Hanin, A. Masura et al., RT-PCR amplification and cloning of partial DNA sequence coding for oil palm (Elaeis oleifera) phytoene synthase gene, Asia Pac J Mol Biol Biotechnol, vol.16, pp.17-24, 2008.

G. Ronen, M. Cohen, D. Zamir, and J. Hirschberg, Regulation of carotenoid biosynthesis during tomato fruit development: expression of the gene for lycopene epsilon-cyclase is down-regulated during ripening and is elevated in the mutantDelta, The Plant Journal, vol.62, issue.4, pp.341-351, 1999.
DOI : 10.1016/0014-5793(95)00368-J

S. Ruuska, T. Girke, C. Benning, and J. Ohlrogge, Contrapuntal Networks of Gene Expression during Arabidopsis Seed Filling, THE PLANT CELL ONLINE, vol.14, issue.6, pp.1191-1206, 2002.
DOI : 10.1105/tpc.000877

N. Saitou and M. Nei, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol Biol Evol, vol.4, pp.406-425, 1987.

R. Sambanthamurthi, K. Sundram, and Y. Tan, Chemistry and biochemistry of palm oil, Progress in Lipid Research, vol.39, issue.6, pp.507-558, 2000.
DOI : 10.1016/S0163-7827(00)00015-1

G. Seymour, M. Poole, K. Manning, and G. King, Genetics and epigenetics of fruit development and ripening, Current Opinion in Plant Biology, vol.11, issue.1, pp.58-63, 2008.
DOI : 10.1016/j.pbi.2007.09.003

G. Seymour, C. Ryder, V. Cevik, J. Hammond, A. Popovich et al., A SEPALLATA gene is involved in the development and ripening of strawberry (Fragariaxananassa Duch.) fruit, a non-climacteric tissue, Journal of Experimental Botany, vol.62, issue.3, pp.1179-1188, 2011.
DOI : 10.1093/jxb/erq360

M. Sharma, R. Kumar, A. Solanke, R. Sharma, A. Tyagi et al., Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato, Molecular Genetics and Genomics, vol.391, issue.6, pp.455-475, 2010.
DOI : 10.1007/s00438-010-0580-1

B. Shen, W. Allen, P. Zheng, C. Li, K. Glassman et al., Expression of ZmLEC1 and ZmWRI1 Increases Seed Oil Production in Maize, PLANT PHYSIOLOGY, vol.153, issue.3, pp.980-987, 2010.
DOI : 10.1104/pp.110.157537

C. Shewmaker, J. Sheehy, M. Daley, S. Colburn, and D. Ke, Seed-specific overexpression of phytoene synthase: increase in carotenoids and other metabolic effects, The Plant Journal, vol.89, issue.618, pp.401-412, 1999.
DOI : 10.1105/tpc.10.5.641/b

R. Siloto, K. Findlay, A. Lopez-villalobos, E. Yeung, C. Nykiforuk et al., The Accumulation of Oleosins Determines the Size of Seed Oilbodies in Arabidopsis, THE PLANT CELL ONLINE, vol.18, issue.8, pp.1961-1974, 2006.
DOI : 10.1105/tpc.106.041269

N. Solomons and M. Orozco, Alleviation of vitamin A deficiency with palm fruit and its products, Asia Pac J Clin Nutr, vol.12, pp.373-384, 2003.

U. Stå-hl, K. Stå-lberg, S. Stymne, and H. Ronne, A family of eukaryotic lysophospholipid acyltransferases with broad specificity, FEBS Lett, vol.235, pp.305-309, 2008.

A. Tadiello, A. Pavanello, D. Zanin, E. Caporali, L. Colombo et al., A PLENA-like gene of peach is involved in carpel formation and subsequent transformation into a fleshy fruit, Journal of Experimental Botany, vol.60, issue.2, pp.651-661, 2009.
DOI : 10.1093/jxb/ern313

T. Takeuchi, Y. Watanabe, T. Takano-shimizu, and S. Kondo, Roles ofjumonji andjumonji family genes in chromatin regulation and development, Developmental Dynamics, vol.25, issue.9, pp.2449-2459, 2006.
DOI : 10.1002/dvdy.20851

Y. Tanaka, N. Sasaki, and A. Ohmiya, Biosynthesis of plant pigments: anthocyanins, betalains and carotenoids, The Plant Journal, vol.21, issue.4, pp.733-749, 2008.
DOI : 10.1186/1471-2229-6-29

A. Thompson, A. Jackson, R. Symonds, B. Mulholland, A. Dadswell et al., -epoxycarotenoid dioxygenase gene causes over-production of abscisic acid, The Plant Journal, vol.131, issue.3, pp.363-374, 2000.
DOI : 10.1046/j.1365-313x.2000.00789.x

URL : https://hal.archives-ouvertes.fr/in2p3-00025581

A. Thompson, M. Tor, C. Barry, J. Vrebalov, C. Orfila et al., Molecular and Genetic Characterization of a Novel Pleiotropic Tomato-Ripening Mutant, Plant Physiology, vol.120, issue.2, pp.383-390, 1999.
DOI : 10.1104/pp.120.2.383

J. Thompson, D. Higgins, and T. Gibson, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994.
DOI : 10.1093/nar/22.22.4673

G. Toledo-ortiz, E. Huq, and M. Rodríguez-concepció-n, Direct regulation of phytoene synthase gene expression and carotenoid biosynthesis by phytochrome-interacting factors, Proceedings of the National Academy of Sciences, vol.107, issue.25, pp.11626-11631, 2010.
DOI : 10.1073/pnas.0914428107

B. Tournier, M. Sanchez-ballesta, B. Jones, E. Pesquet, F. Regad et al., New members of the tomato ERF family show specific expression pattern and diverse DNA-binding capacity to the GCC box element, FEBS Letters, vol.5, issue.1-3, pp.149-154, 2003.
DOI : 10.1016/S0014-5793(03)00757-9

J. Vrebalov, I. Pan, A. Arroyo, R. Mcquinn, M. Chung et al., Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1, The Plant Cell, vol.21, issue.10, pp.3041-3062, 2009.
DOI : 10.1105/tpc.109.066936

J. Vrebalov, D. Ruezinsky, V. Padmanabhan, R. White, D. Medrano et al., A MADS-Box Gene Necessary for Fruit Ripening at the Tomato Ripening-Inhibitor (Rin) Locus, Science, vol.296, issue.5566, pp.343-346, 2002.
DOI : 10.1126/science.1068181

A. Wang, D. Tan, A. Takahashi, T. Li, and T. Harada, MdERFs, two ethylene-response factors involved in apple fruit ripening, Journal of Experimental Botany, vol.58, issue.13, pp.3743-3748, 2007.
DOI : 10.1093/jxb/erm224

J. Wasmuth and M. Blaxter, prot4EST: translating expressed sequence tags from neglected genomes, BMC Bioinformatics, vol.5, issue.1, p.187, 2004.
DOI : 10.1186/1471-2105-5-187

R. Welsch, J. Arango, C. Bär, B. Salazar, S. Babili et al., ) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase Gene, The Plant Cell, vol.22, issue.10, pp.3348-3356, 2010.
DOI : 10.1105/tpc.110.077560

R. Welsch, D. Maass, T. Voegel, D. Dellapenna, and P. Beyer, Transcription Factor RAP2.2 and Its Interacting Partner SINAT2: Stable Elements in the Carotenogenesis of Arabidopsis Leaves, PLANT PHYSIOLOGY, vol.145, issue.3, pp.1073-1085, 2007.
DOI : 10.1104/pp.107.104828

J. Wilkinson, M. Lanahan, H. Yen, J. Giovannoni, and H. Klee, An Ethylene-Inducible Component of Signal Transduction Encoded by Never-ripe, Science, vol.270, issue.5243, pp.1807-1809, 1995.
DOI : 10.1126/science.270.5243.1807

Z. Xie, X. Li, B. Glover, S. Bai, G. Rao et al., Duplication and Functional Diversification of HAP3 Genes Leading to the Origin of the Seed-Developmental Regulatory Gene, LEAFY COTYLEDON1 (LEC1), in Nonseed Plant Genomes, Molecular Biology and Evolution, vol.25, issue.8, pp.1581-1592, 2008.
DOI : 10.1093/molbev/msn105

J. Yao, Y. Dong, and B. Morris, Parthenocarpic apple fruit production conferred by transposon insertion mutations in a MADS-box transcription factor, Proceedings of the National Academy of Sciences, vol.98, issue.3, pp.1306-1311, 2001.
DOI : 10.1073/pnas.98.3.1306

X. Yin, A. Allan, K. Chen, and I. Ferguson, Kiwifruit EIL and ERF Genes Involved in Regulating Fruit Ripening, PLANT PHYSIOLOGY, vol.153, issue.3, pp.1280-1292, 2010.
DOI : 10.1104/pp.110.157081

N. Yokotani, R. Nakano, S. Imanishi, M. Nagata, A. Inaba et al., Ripening-associated ethylene biosynthesis in tomato fruit is autocatalytically and developmentally regulated, Journal of Experimental Botany, vol.60, issue.12, pp.3433-3442, 2009.
DOI : 10.1093/jxb/erp185

E. Zdobnov and R. Apweiler, InterProScan - an integration platform for the signature-recognition methods in InterPro, Bioinformatics, vol.17, issue.9, pp.847-848, 2001.
DOI : 10.1093/bioinformatics/17.9.847

L. Zhang, Y. Xu, and R. Ma, Molecular cloning, identification, and chromosomal localization of two MADS box genes in peach (Prunus persica), Journal of Genetics and Genomics, vol.35, issue.6, pp.365-372, 2008.
DOI : 10.1016/S1673-8527(08)60053-3

M. Zhang, J. Fan, D. Taylor, and J. Ohlrogge, DGAT1 and PDAT1 Acyltransferases Have Overlapping Functions in Arabidopsis Triacylglycerol Biosynthesis and Are Essential for Normal Pollen and Seed Development, The Plant Cell, vol.21, issue.12, pp.3885-3901, 2009.
DOI : 10.1105/tpc.109.071795

M. Zhang, B. Yuan, and P. Leng, The role of ABA in triggering ethylene biosynthesis and ripening of tomato fruit, Journal of Experimental Botany, vol.60, issue.6, pp.1579-1588, 2009.
DOI : 10.1093/jxb/erp026