Xanthomonas oryzae pathovars: model pathogens of a model crop, Molecular Plant Pathology, vol.11, issue.5, pp.303-324, 2006. ,
DOI : 10.1105/tpc.11.9.1665
Rice Bacterial Leaf Blight in West Africa: Preliminary Studies on Disease in Farmers' Fields and Screening Released Varieties for Resistance to the Bacteria, Asian Journal of Plant Sciences, vol.4, pp.577-579, 2005. ,
Assessment of genetic diversity and population structure of Xanthomonas oryzae pv. oryzae with a repetitive DNA element, Appl Environ Microbiol, vol.58, pp.2188-2195, 1992. ,
Relationship between phylogeny and pathotype for the bacterial blight pathogen of rice, Appl Environ Microbiol, vol.60, pp.3275-3283, 1994. ,
in Nepal, Phytopathology, vol.89, issue.8, pp.687-694, 1999. ,
DOI : 10.1094/PHYTO.1999.89.8.687
URL : https://hal.archives-ouvertes.fr/hal-01262071
Predicting durability of a disease resistance gene based on an assessment of the fitness loss and epidemiological consequences of avirulence gene mutation, Proceedings of the National Academy of Sciences, vol.97, issue.25, pp.13500-13505, 2000. ,
DOI : 10.1073/pnas.250271997
Global Gene Expression Analysis of the Heat Shock Response in the Phytopathogen Xylella fastidiosa, Journal of Bacteriology, vol.188, issue.16, pp.5821-5830, 2006. ,
DOI : 10.1128/JB.00182-06
Global transcriptional responses of Pseudomonas syringae DC3000 to changes in iron bioavailability in vitro, BMC Microbiology, vol.8, issue.1, p.209, 2008. ,
DOI : 10.1186/1471-2180-8-209
Identification of Xanthomonas campestris pv. campestris galactose utilization genes from transcriptome data, Journal of Biotechnology, vol.135, issue.3, pp.309-317, 2008. ,
DOI : 10.1016/j.jbiotec.2008.04.011
Element, and Identifies Novel Coregulated Genes, Molecular Plant-Microbe Interactions, vol.19, issue.11, pp.1167-1179, 2006. ,
DOI : 10.1094/MPMI-19-1167
Type III Secretion System Genes in Rich and Minimal Media and Reduces Pathogenicity, Molecular Plant-Microbe Interactions, vol.20, issue.6, pp.682-696, 2007. ,
DOI : 10.1094/MPMI-20-6-0682
Genome scale analysis of diffusible signal factor regulon in Xanthomonas campestris pv. campestris: identification of novel cell-cell communication-dependent genes and functions. Molecular microbiology, pp.610-622, 2006. ,
Characterization of Regulatory Pathways in Xylella fastidiosa: Genes and Phenotypes Controlled by gacA, Applied and Environmental Microbiology, vol.75, issue.8, pp.2275-2283, 2009. ,
DOI : 10.1128/AEM.01964-08
Comparative and functional genomics reveals genetic diversity and determinants of host specificity among reference strains and a large collection of Chinese isolates of the phytopathogen Xanthomonas campestris pv. campestris, Genome Biology, vol.8, issue.10, p.218, 2007. ,
DOI : 10.1186/gb-2007-8-10-r218
Horizontal gene transfer between Ralstonia solanacearum strains detected by comparative genomic hybridization on microarrays, The ISME Journal, vol.86, issue.5, pp.549-562, 2009. ,
DOI : 10.1128/AEM.00841-07
URL : https://hal.archives-ouvertes.fr/halsde-00526064
A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes, BMC Microbiology, vol.8, issue.1, p.99, 2008. ,
DOI : 10.1186/1471-2180-8-99
Expression of Xanthomonas oryzae pv. oryzae hrp Genes in XOM2, a Novel Synthetic Medium, Journal of General Plant Pathology, vol.68, issue.4, p.363, 2002. ,
DOI : 10.1007/PL00013104
Integrated Regulation of the Type III Secretion System and Other Virulence Determinants in Ralstonia solanacearum, PLoS Pathogens, vol.15, issue.8, p.82, 2006. ,
DOI : 10.1371/journal.ppat.0020082.st002
Is Coordinated in Response to Plant Signal Molecules, Molecular Plant-Microbe Interactions, vol.19, issue.3, pp.257-269, 2006. ,
DOI : 10.1094/MPMI-19-0257
The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice, Nucleic Acids Research, vol.33, issue.2, pp.577-586, 2005. ,
DOI : 10.1093/nar/gki206
Genome Sequence of Xanthomonas oryzae pv. oryzae Suggests Contribution of Large Numbers of Effector Genes and Insertion Sequences to Its Race Diversity, Japan Agricultural Research Quarterly: JARQ, vol.39, issue.4, pp.275-287, 2005. ,
DOI : 10.6090/jarq.39.275
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A, BMC Genomics, vol.9, issue.1, p.204, 2008. ,
DOI : 10.1186/1471-2164-9-204
Strains from West Africa, Molecular Plant-Microbe Interactions, vol.20, issue.5, pp.534-546, 2007. ,
DOI : 10.1094/MPMI-20-5-0534
URL : https://hal.archives-ouvertes.fr/hal-00168834
Expression Profiling of Virulence and Pathogenicity Genes of Xanthomonas axonopodis pv. citri, Journal of Bacteriology, vol.187, issue.3, pp.1201-1205, 2005. ,
DOI : 10.1128/JB.187.3.1201-1205.2005
A Simple Method for In Vivo Expression Studies of Xanthomonas axonopodis pv. citri, Current Microbiology, vol.47, issue.5, pp.400-403, 2003. ,
DOI : 10.1007/s00284-003-4051-3
Genomic comparison between Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola, using suppression-subtractive hybridization, FEMS Microbiology Letters, vol.308, issue.1, pp.16-23, 2010. ,
DOI : 10.1111/j.1574-6968.2010.01985.x
Identification of differentially expressed genes of Xanthomonas axonopodis pv. citri by representational difference analysis, Genetics and Molecular Biology, vol.28, pp.140-149, 2005. ,
Identification of Genes in Xanthomonas campestris pv. vesicatoria Induced during Its Interaction with Tomato, Journal of Bacteriology, vol.189, issue.17, pp.6359-6371, 2007. ,
DOI : 10.1128/JB.00320-07
Gene Ontology: tool for the unification of biology, Nature Genetics, vol.9, issue.1, pp.25-29, 2000. ,
DOI : 10.1038/75556
Vascular Defense Responses in Rice: Peroxidase Accumulation in Xylem Parenchyma Cells and Xylem Wall Thickening, Molecular Plant-Microbe Interactions, vol.14, issue.12, pp.1411-1419, 2001. ,
DOI : 10.1094/MPMI.2001.14.12.1411
An efficient method for visualization and growth of fluorescent Xanthomonas oryzae pv. oryzae in planta, BMC Microbiology, vol.8, issue.1, p.164, 2008. ,
DOI : 10.1186/1471-2180-8-164
Dynamics of Type IV Pili Is Controlled by Switching Between Multiple States, Biophysical Journal, vol.96, issue.3, pp.1169-1177, 2009. ,
DOI : 10.1016/j.bpj.2008.10.017
Functional analysis of pilQ gene in Xanthomanas oryzae pv. oryzae, bacterial blight pathogen of rice, The Journal of Microbiology, vol.50, issue.2, pp.214-220, 2008. ,
DOI : 10.1007/s12275-007-0173-9
requires type 4 pili to adhere to multiple surfaces and for natural transformation and virulence, Molecular Microbiology, vol.31, issue.2, pp.427-437, 2002. ,
DOI : 10.1046/j.1365-2958.2002.03187.x
Twitching motility of Ralstonia solanacearum requires a type IV pilus system, Microbiology, vol.147, issue.12, pp.3215-3229, 2001. ,
DOI : 10.1099/00221287-147-12-3215
Upstream Migration of Xylella fastidiosa via Pilus-Driven Twitching Motility, Journal of Bacteriology, vol.187, issue.16, pp.5560-5567, 2005. ,
DOI : 10.1128/JB.187.16.5560-5567.2005
A Filamentous Hemagglutinin-Like Protein of Xanthomonas axonopodis pv. citri, the Phytopathogen Responsible for Citrus Canker, Is Involved in Bacterial Virulence, PLoS ONE, vol.50, issue.2, p.4358, 2009. ,
DOI : 10.1371/journal.pone.0004358.g006
PILZ Protein Structure and Interactions with PILB and the FIMX EAL Domain: Implications for Control of Type IV Pilus Biogenesis, Journal of Molecular Biology, vol.393, issue.4, pp.848-866, 2009. ,
DOI : 10.1016/j.jmb.2009.07.065
Novel Candidate Virulence Factors in Rice Pathogen Xanthomonas oryzae pv. oryzicola as Revealed by Mutational Analysis, Applied and Environmental Microbiology, vol.73, issue.24, pp.8023-8027, 2007. ,
DOI : 10.1128/AEM.01414-07
O-antigen structural variation: mechanisms and possible roles in animal/plant???microbe interactions, FEMS Microbiology Reviews, vol.26, issue.1, pp.17-47, 2002. ,
DOI : 10.1111/j.1574-6976.2002.tb00597.x
Gene expression profile of the plant pathogen Xylella fastidiosa during biofilm formation in vitro, FEMS Microbiology Letters, vol.237, issue.2, pp.341-353, 2004. ,
DOI : 10.1111/j.1574-6968.2004.tb09716.x
Novel Molecular Features of the Fibrolytic Intestinal Bacterium Fibrobacter intestinalis Not Shared with Fibrobacter succinogenes as Determined by Suppressive Subtractive Hybridization, Journal of Bacteriology, vol.187, issue.11, pp.3739-3751, 2005. ,
DOI : 10.1128/JB.187.11.3739-3751.2005
in Promoting Virulence on Rice, Molecular Plant-Microbe Interactions, vol.18, issue.8, pp.830-837, 2005. ,
DOI : 10.1094/MPMI-18-0830
Host and Pathogen Factors Controlling the Rice-Xanthomonas oryzae Interaction, PLANT PHYSIOLOGY, vol.150, issue.4, pp.1677-1686, 2009. ,
DOI : 10.1104/pp.109.139360
How Xanthomonas type III effectors manipulate the host plant, Current Opinion in Microbiology, vol.12, issue.1, pp.37-43, 2009. ,
DOI : 10.1016/j.mib.2008.12.006
The virulence factor AvrXa7 of Xanthomonas oryzae pv. oryzae is a type III secretion pathway-dependent nuclear-localized double-stranded DNA-binding protein, Proceedings of the National Academy of Sciences, vol.97, issue.17, pp.9807-9812, 2000. ,
DOI : 10.1073/pnas.170286897
Diverse Members of the AvrBs3/PthA Family of Type III Effectors Are Major Virulence Determinants in Bacterial Blight Disease of Rice, Molecular Plant-Microbe Interactions, vol.17, issue.11, pp.1192-1200, 2004. ,
DOI : 10.1094/MPMI.2004.17.11.1192
The conserved Xanthomonas campestris pv. vesicatoria effector protein XopX is a virulence factor and suppresses host defense in Nicotiana benthamiana, The Plant Journal, vol.97, issue.6, pp.801-814, 2005. ,
DOI : 10.1111/j.1365-313X.2005.02338.x
The type III secretion effector XopXccN of Xanthomonas campestris pv. campestris is required for full virulence, Research in Microbiology, vol.159, issue.3, pp.216-220, 2008. ,
DOI : 10.1016/j.resmic.2007.12.004
Port of entry ??? the type III secretion translocon, Trends in Microbiology, vol.10, issue.4, pp.186-192, 2002. ,
DOI : 10.1016/S0966-842X(02)02331-4
Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism, FEMS Microbiology Letters, vol.281, issue.1, pp.87-97, 2008. ,
DOI : 10.1111/j.1574-6968.2008.01083.x
Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli, BMC Microbiology, vol.8, issue.1, p.127, 2008. ,
DOI : 10.1186/1471-2180-8-127
Mobil'omics, OMICS: A Journal of Integrative Biology, vol.9, issue.2, pp.146-159, 2005. ,
DOI : 10.1089/omi.2005.9.146
Structural flexibility in the Burkholderia mallei genome, CM: Structural flexibility in the Burkholderia mallei genome, pp.14246-14251, 2004. ,
DOI : 10.1073/pnas.0403306101
Regulation of transposition in bacteria, Research in Microbiology, vol.155, issue.5, pp.387-398, 2004. ,
DOI : 10.1016/j.resmic.2004.01.008
IS elements as constituents of bacterial genomes, Research in Microbiology, vol.150, issue.9-10, pp.675-687, 1999. ,
DOI : 10.1016/S0923-2508(99)00124-2
Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence, Journal of Bacteriology, vol.187, issue.21, pp.7254-7266, 2005. ,
DOI : 10.1128/JB.187.21.7254-7266.2005
Novel Insertion Sequence Elements Associated with Genetic Heterogeneity and Phenotype Conversion in Ralstonia solanacearum, Journal of Bacteriology, vol.182, issue.16, pp.4673-4676, 2000. ,
DOI : 10.1128/JB.182.16.4673-4676.2000
Investigation of Repeating Sequences in hrpL Neighboring Region of Pseudomonas syringae Strains., Japanese Journal of Phytopathology, vol.65, issue.2, pp.100-109, 1999. ,
DOI : 10.3186/jjphytopath.65.100
Transcriptional activation of the citrate permease P gene of Lactococcus lactis biovar diacetylactis by an insertion sequence-like element present in plasmid pCIT264, Mol Gen Genet, vol.250, pp.428-436, 1996. ,
The Novel Insertion Sequences IS1417, IS1418, and IS1419 from Burkholderia glumae and Their Strain Distribution, Plasmid, vol.44, issue.1, pp.44-53, 2000. ,
DOI : 10.1006/plas.2000.1466
An improved technique for evaluating resistance of rice varieties to Xanthomonas oryzae, Plant Dis Rep, vol.57, pp.537-541, 1973. ,
TM4: a free open-source system for microarray data management and analysis, Biotechniques, vol.34, pp.374-378, 2003. ,
Significance analysis of microarrays applied to the ionizing radiation response, Proceedings of the National Academy of Sciences, vol.98, issue.9, pp.5116-5121, 2001. ,
DOI : 10.1073/pnas.091062498
A unigene catalogue of 5700 expressed genes in cassava, Plant Molecular Biology, vol.296, issue.4, pp.541-554, 2004. ,
DOI : 10.1007/s11103-004-0123-4
URL : https://hal.archives-ouvertes.fr/hal-00168792
In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1 BMC Microbiology, p.170, 2010. ,