N. Aschliman, M. Nishida, M. Miya, J. Inoue, K. Rosana et al., Body plan convergence in the evolution of skates and rays (Chondrichthyes: Batoidea), Molecular Phylogenetics and Evolution, vol.63, issue.1, pp.28-42, 2012.
DOI : 10.1016/j.ympev.2011.12.012

H. Bandelt, P. Forster, and A. Röhl, Median-joining networks for inferring intraspecific phylogenies, Molecular Biology and Evolution, vol.16, issue.1, pp.37-48, 1999.
DOI : 10.1093/oxfordjournals.molbev.a026036

L. Beheregaray, Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere, Molecular Ecology, vol.271, pp.3754-3774, 2008.
DOI : 10.1111/j.1365-294X.2008.03857.x

P. Borsa, I. Arlyza, W. Chen, J. Durand, M. Meekan et al., Resurrection of New Caledonian maskray Neotrygon trigonoides (Myliobatoidei: Dasyatidae) from synonymy with N.??kuhlii, based on cytochrome-oxidase I gene sequences and spotting patterns, Comptes Rendus Biologies, vol.336, issue.4, pp.221-232, 2013.
DOI : 10.1016/j.crvi.2013.05.005
URL : https://hal.archives-ouvertes.fr/ird-00847459

P. Borsa, I. Arlyza, M. Laporte, and P. Berrebi, Population genetic structure of blue-spotted maskray Neotrygon kuhlii and two other Indo-West Pacific stingray species (Myliobatiformes: Dasyatidae), inferred from size-polymorphic intron markers, Journal of Experimental Marine Biology and Ecology, vol.438, pp.32-40, 2012.
DOI : 10.1016/j.jembe.2012.09.010
URL : https://hal.archives-ouvertes.fr/ird-00747306

C. Bull, Ecology of Parapatric Distributions, Annual Review of Ecology and Systematics, vol.22, issue.1, pp.19-36, 1991.
DOI : 10.1146/annurev.es.22.110191.000315

C. Capapé, New data on the reproductive biology of the thorny stingray, Dasyatis centroura (Pisces: Dasyatidae) from off the Tunisian coasts, Env Biol Fish, vol.38, pp.73-80, 1993.
DOI : 10.1007/978-94-017-3450-9_7

C. Capapé and J. Zaouali, Reproductive biology of the marbled stingray, Dasyatis marmorata (Steindachner, 1892) (Pisces: Dasyatidae) in Tunisian waters (central Mediterranean), J Aquariculture Aquat Sci, vol.7, pp.108-119, 1995.

J. Carrier and H. Pratt, Habitat management and closure of a nurse shark breeding and nursery ground, Fisheries Research, vol.39, issue.2, pp.209-213, 1998.
DOI : 10.1016/S0165-7836(98)00184-2

F. Castelnau and . De, 1873. Contribution to the ichthyology of Australia, Proc Zool Acclim Soc Victoria, vol.2, pp.37-158

M. Puckridge, P. Last, W. White, and N. Andreakis, ): a complex example of chondrichthyan radiation in the Cenozoic, Ecology and Evolution, vol.92, issue.2, 2013.
DOI : 10.1002/ece3.448

V. Richards, M. Henning, W. Witzell, and M. Shivji, Species Delineation and Evolutionary History of the Globally Distributed Spotted Eagle Ray (Aetobatus narinari), Journal of Heredity, vol.100, issue.3, pp.273-283, 2009.
DOI : 10.1093/jhered/esp005

W. Ryan, S. Carbotte, J. Coplan, O. Hara, S. Melkonian et al., Global Multi-Resolution Topography synthesis, Geochemistry, Geophysics, Geosystems, vol.102, issue.1, 2009.
DOI : 10.1029/2008GC002332

J. Sandoval-castillo and A. Rocha-olivares, Deep Mitochondrial Divergence in Baja California Populations of an Aquilopelagic Elasmobranch: The Golden Cownose Ray, Journal of Heredity, vol.102, issue.3, pp.269-274, 2011.
DOI : 10.1093/jhered/esr004

V. Schluessel, D. Broderick, S. Collin, and J. Ovenden, Evidence for extensive population structure in the white-spotted eagle ray within the Indo-Pacific inferred from mitochondrial gene sequences, Journal of Zoology, vol.19, issue.1, pp.46-55, 2010.
DOI : 10.1111/j.1469-7998.2009.00680.x

B. Stelbrink, T. Von-rintelen, G. Cliff, and J. Kriwet, Molecular systematics and global phylogeography of angel sharks (genus Squatina), Molecular Phylogenetics and Evolution, vol.54, issue.2, pp.395-404, 2010.
DOI : 10.1016/j.ympev.2009.07.029

K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei et al., MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods, Molecular Biology and Evolution, vol.28, issue.10, pp.2731-2739, 2011.
DOI : 10.1093/molbev/msr121

H. Voris, Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations, Journal of Biogeography, vol.313, issue.5, pp.1153-1167, 2000.
DOI : 10.1016/0277-3791(87)90003-5

R. Ward, R. Hanner, and P. Hebert, The campaign to DNA barcode all fishes, FISH-BOL, Journal of Fish Biology, vol.57, issue.Suppl. B, pp.329-356, 2009.
DOI : 10.1111/j.1095-8649.2008.02080.x

R. Ward, B. Holmes, W. White, and P. Last, DNA barcoding Australasian chondrichthyans: results and potential uses in conservation, Marine and Freshwater Research, vol.59, issue.1, pp.57-71, 2008.
DOI : 10.1071/MF07148

N. Whitney, R. Pyle, K. Holland, and J. Barcz, Movements, philopatry, and reproductive seasonality in the whitetip reef shark (Triaenodon obesus) from community-based photo-identification, 2012.

N. Yagishita, K. Furumitsu, and A. Yamaguchi, Molecular evidence for the taxonomic status of an undescribed species of Dasyatis (Chondrichthyes: Dasyatidae) from Japan. Species Diversity, pp.157-164, 2009.

L. Excoffier and H. Lischer, Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Molecular Ecology Resources, vol.127, issue.3, pp.564-567, 2010.
DOI : 10.1111/j.1755-0998.2010.02847.x

M. Nei, Molecular evolutionary genetics, 1987.

B. Weir and C. Cockerham, Estimating F-Statistics for the Analysis of Population Structure, Evolution, vol.38, issue.6, pp.1358-1370, 1984.
DOI : 10.2307/2408641

. Fig, S1 Phylogenetic trees of Neotrygon kuhlii haplotypes rooted by its sister-species N. trigonoides