N. Barton, The effects of linkage and density-dependent regulation on gene flow, Heredity, vol.57, issue.3, pp.415-426, 1986.
DOI : 10.1038/hdy.1986.142

N. Barton, Estimating multilocus linkage disequilibria, Heredity, vol.138, issue.3, pp.373-389, 2000.
DOI : 10.1146/annurev.es.14.110183.002003

N. Barton and G. Hewitt, Analysis of Hybrid Zones, Annual Review of Ecology and Systematics, vol.16, issue.1, pp.113-148, 1985.
DOI : 10.1146/annurev.es.16.110185.000553

A. Beaumont, Linkage studies in Mytilus edulis, the mussel, Heredity, vol.72, issue.6, pp.557-562, 1994.
DOI : 10.1038/hdy.1994.76

N. Bierne, P. Borsa, C. Daguin, D. Jollivet, F. Viard et al., Introgression patterns in the mosaic hybrid zone between Mytilus edulis and M. galloprovincialis, Molecular Ecology, vol.112, issue.2, pp.447-462, 2003.
DOI : 10.1007/s002270050342

P. Borsa, C. Daguin, R. Caetano, S. Bonhomme, and F. , Nuclear-DNA evidence that northeastern Atlantic Mytilus trossulus mussels carry M. edulis genes, Journal Molluscan Studies, vol.65, issue.4, pp.524-527, 1999.
DOI : 10.1093/mollus/65.4.504

URL : https://hal.archives-ouvertes.fr/ird-00204025

H. Bulnheim and E. Gosling, Population genetic structure of mussels from the Baltic Sea, Helgol??nder Meeresuntersuchungen, vol.58, issue.1, pp.113-129, 1988.
DOI : 10.1007/BF02364207

N. Buroker, Population genetics of the American oyster Crassostrea virginica along the Atlantic coast and the Gulf of Mexico, Marine Biology, vol.34, issue.1, pp.99-112, 1983.
DOI : 10.1007/BF00392635

C. Daguin, F. Bonhomme, and P. Borsa, The zone of sympatry and hybridization of Mytilus edulis and M. galloprovincialis, as described by intron length polymorphism at locus mac-1, Heredity, vol.36, issue.3, pp.342-354, 2001.
DOI : 10.1175/1520-0485(1988)018<1384:ASOAID>2.0.CO;2

URL : https://hal.archives-ouvertes.fr/hal-00553339

F. Dufresne, E. Bourget, and L. Bernatchez, Differential patterns of spatial divergence in microsatellite and allozyme alleles: further evidence for locus-specific selection in the acorn barnacle, Semibalanus balanoides?, Molecular Ecology, vol.38, issue.1, pp.113-123, 2002.
DOI : 10.1038/35059079

W. Eanes, Analysis of Selection on Enzyme Polymorphisms, Annual Review of Ecology and Systematics, vol.30, issue.1, pp.301-326, 1999.
DOI : 10.1146/annurev.ecolsys.30.1.301

M. Hare and J. Avise, Molecular Genetic Analysis of a Stepped Multilocus Cline in the American Oyster (Crassostrea virginica), Evolution, vol.50, issue.6, pp.2305-2315, 1996.
DOI : 10.2307/2410699

M. Hare and J. Avise, Population structure in the American oyster as inferred by nuclear gene genealogies, Molecular Biology and Evolution, vol.15, issue.2, pp.119-128, 1998.
DOI : 10.1093/oxfordjournals.molbev.a025908

R. Harrison, Hybrid zones: windows on evolutionary processes, Oxford Surveys in Evolutionary Biology, vol.7, pp.69-128, 1990.

P. Hedrick, Perspective: Highly Variable Loci and Their Interpretation in Evolution and Conservation, Evolution, vol.53, issue.2, pp.313-318, 1999.
DOI : 10.2307/2640768

E. Holm and E. Bourget, Selection and population genetic structure of the barnacle Semibalanus balanoides in the northwest Atlantic and Gulf of St. Lawrence, Marine Ecology Progress Series, vol.113, pp.247-256, 1994.
DOI : 10.3354/meps113247

R. Hudson and M. Turelli, Stochasticity overrules the 'threetimes rule': genetic drift, genetic draft, and coalescence times for nuclear loci versus mitochondrial DNA, Evolution, vol.57, pp.182-190, 2003.

D. Irwin, PHYLOGEOGRAPHIC BREAKS WITHOUT GEOGRAPHIC BARRIERS TO GENE FLOW, Evolution, vol.28, issue.12, pp.2383-2394, 2002.
DOI : 10.1080/106351502753475880

S. Karl and J. Avise, Balancing selection at allozyme loci in oysters: implications from nuclear RFLPs, Science, vol.256, issue.5053, pp.100-102, 1992.
DOI : 10.1126/science.1348870

C. Machado, R. Kliman, J. Markert, and J. Hey, Inferring the History of Speciation from Multilocus DNA Sequence Data: The Case of Drosophila pseudoobscura and Close Relatives, Molecular Biology and Evolution, vol.19, issue.4, pp.472-488, 2002.
DOI : 10.1093/oxfordjournals.molbev.a004103

J. Mcdonald, Detecting Natural Selection by Comparing Geographic Variation in Protein and DNA Polymorphisms, pp.88-100, 1994.
DOI : 10.1007/978-1-4615-2383-3_8

J. Mcdonald and R. Koehn, The musselsMytilus galloprovincialis andM. trossulus on the Pacific coast of North America, Marine Biology, vol.20, issue.1, pp.111-118, 1988.
DOI : 10.1007/BF00644984

J. Mcdonald, B. Verrelli, and L. Geyer, Lack of geographic variation in anonymous nuclear polymorphisms in the American oyster, Crassostrea virginica, Molecular Biology and Evolution, vol.13, issue.8, pp.1114-1118, 1996.
DOI : 10.1093/oxfordjournals.molbev.a025673

J. Mork, N. Ryman, G. Ståhl, F. Utter, and G. Sundnes, ) Throughout Its Range, Canadian Journal of Fisheries and Aquatic Sciences, vol.42, issue.10, pp.1580-1587, 1985.
DOI : 10.1139/f85-198

E. Nielsen, M. Hansen, D. Ruzzante, D. Meldrup, and P. Grønkjaer, Evidence of a hybrid-zone in Atlantic cod (Gadus morhua) in the Baltic and the Danish Belt Sea revealed by individual admixture analysis, Molecular Ecology, vol.38, issue.6, pp.1497-1508, 2003.
DOI : 10.1006/jfbi.1994.1021

G. Pogson, K. Mesa, and R. Boutilier, Genetic population structure and gene flow in the Atlantic cod Gadus morhua: a comparison of allozyme and nuclear RFLP loci, Genetics, vol.139, pp.375-385, 1995.

P. Rawson and T. Hilbish, Evolutionary relationships among the male and female mtDNA lineages in the Mytilus edulis species complex, Molecular Biology and Evolution, vol.12, pp.893-901, 1995.

M. Raymond and F. Rousset, GENEPOP (Version 1.2): Population Genetics Software for Exact Tests and Ecumenicism, Journal of Heredity, vol.86, issue.3, pp.248-249, 1995.
DOI : 10.1093/oxfordjournals.jhered.a111573

URL : https://hal.archives-ouvertes.fr/halsde-00186383

L. Rieseberg, J. Whitton, and K. Gardner, Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species, Genetics, vol.152, pp.713-727, 1999.

C. Riginos, K. Sukhdeo, and C. Cunningham, Evidence for Selection at Multiple Allozyme Loci Across a Mussel Hybrid Zone, Molecular Biology and Evolution, vol.19, issue.3, pp.347-351, 2002.
DOI : 10.1093/oxfordjournals.molbev.a004088

P. Schmidt and D. Rand, Intertidal Microhabitat and Selection at MPI: Interlocus Contrasts in the Northern Acorn Barnacle, Semibalanus balanoides, Evolution, vol.53, issue.1, pp.135-146, 1999.
DOI : 10.2307/2640926

D. Skibinski, J. Beardmore, and T. Cross, Aspects of the population genetics of Mytilus (Mytilidae; Mollusca) in the British Isles, Biological Journal of the Linnean Society, vol.19, issue.2, pp.137-183, 1983.
DOI : 10.1111/j.1095-8312.1983.tb00782.x

R. Väinölä and M. Hvilsom, Genetic divergence and a hybrid zone between Baltic and North Sea Mytilus populations (Mytilidae: Mollusca), Biological Journal of the Linnean Society, vol.43, issue.2, pp.127-148, 1991.
DOI : 10.1111/j.1095-8312.1991.tb00589.x

S. Varvio, R. Koehn, and R. Väinölä, Evolutionary genetics of the Mytilus edulis complex in the North Atlantic region, Marine Biology, vol.17, issue.1, pp.51-60, 1988.
DOI : 10.1007/BF00392658

J. Wakeley, THE EFFECTS OF SUBDIVISION ON THE GENETIC DIVERGENCE OF POPULATIONS AND SPECIES, Evolution, vol.131, issue.4, pp.1092-1101, 2000.
DOI : 10.1016/0040-5809(75)90020-9