Hybridization and speciation, Journal of Evolutionary Biology, vol.9, issue.2, pp.229-246, 2013. ,
DOI : 10.1111/j.1420-9101.2012.02599.x
Ecomorphological diversification in reef fish of the genus Abudefduf (Percifomes, Pomacentridae), Zoomorphology, vol.30, issue.4, pp.103-114, 2016. ,
DOI : 10.1007/s00435-015-0291-6
Conservation hotspots of biodiversity and endemism for Indo?Pacific coral reef fishes Aquatic Conservation: Marine and Freshwater Ecosystems, pp.541-556, 2008. ,
Analysis of Hybrid Zones, Annual Review of Ecology and Systematics, vol.16, issue.1, pp.113-148, 1985. ,
DOI : 10.1146/annurev.es.16.110185.000553
Adaptation, speciation and hybrid zones, Nature, vol.341, issue.6242, pp.497-503, 1989. ,
DOI : 10.1038/341497a0
Comparative phylogeography of the western Indian Ocean reef fauna, Acta Oecologica, vol.72, pp.72-86, 2016. ,
DOI : 10.1016/j.actao.2015.10.009
URL : https://hal.archives-ouvertes.fr/ird-01278855
The origins of tropical marine biodiversity, Trends in Ecology & Evolution, vol.28, issue.6, pp.359-366, 2013. ,
DOI : 10.1016/j.tree.2013.01.018
Phylogeography unplugged: comparative surveys in the genomic era, Bulletin of Marine Science, vol.90, issue.1, pp.13-46, 2014. ,
DOI : 10.5343/bms.2013.1007
A realignment of marine biogeographic provinces with particular reference to fish distributions, Journal of Biogeography, vol.292, issue.Suppl. 2, pp.12-30, 2012. ,
DOI : 10.1111/j.1365-2699.2011.02613.x
Marine shelf habitat: biogeography and evolution, Journal of Biogeography, vol.32, issue.Suppl. 1, pp.1023-1035, 2013. ,
DOI : 10.1111/jbi.12082
Comparative Phylogeography of the Coral Triangle and Implications for Marine Management, Journal of Marine Biology, vol.19, issue.5, p.14, 2011. ,
DOI : 10.1073/pnas.0808007106
Patterns and processes in the evolutionary history of parrotfishes (Family Labridae), Biological Journal of the Linnean Society, vol.107, issue.3, pp.529-557, 2012. ,
DOI : 10.1111/j.1095-8312.2012.01959.x
Magnificent dimensions, varied forms, and brilliant colors: the molecular ecology and evolution of the Indian and Pacific oceans, Bulletin of Marine Science, vol.90, issue.1, pp.1-11, 2014. ,
DOI : 10.5343/bms.2013.1086
Exploring the radiation of a diverse reef fish family: Phylogenetics of the damselfishes (Pomacentridae), with new classifications based on molecular analyses of all genera, Molecular Phylogenetics and Evolution, vol.52, issue.1, pp.1-16, 2009. ,
DOI : 10.1016/j.ympev.2008.12.010
Re-description and reassignment of the damselfish Abudefduf luridus (Cuvier, 1830) using both traditional and geometric morphometric approaches, Copeia, pp.473-480, 2014. ,
Phylogeography of Two Closely Related Indo-Pacific Butterflyfishes Reveals Divergent Evolutionary Histories and Discordant Results from mtDNA and Microsatellites, Journal of Heredity, vol.103, issue.5, pp.617-629, 2012. ,
DOI : 10.1093/jhered/ess056
After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean, Journal of Biogeography, vol.66, issue.6, pp.1170-1181, 2013. ,
DOI : 10.1111/jbi.12068
When biogeographical provinces collide: hybridization of reef fishes at the crossroads of marine biogeographical provinces in the Arabian Sea, Journal of Biogeography, vol.40, issue.9, pp.1601-1614, 2015. ,
DOI : 10.1111/jbi.12526
Congruence between mitochondrial genes and color morphs in a coral reef fish: population variability in the Indo-Pacific damselfish Chrysiptera rex (Snyder, 1909), Coral Reefs, vol.3, issue.2, pp.439-444, 1909. ,
DOI : 10.1007/s00338-010-0586-5
Escaping paradise: larval export from Hawaii in an??Indo-Pacific reef fish, the yellow tang Zebrasoma flavescens, Marine Ecology Progress Series, vol.428, pp.245-258, 2011. ,
DOI : 10.3354/meps09083
Catalog of Fishes: genera, species, references, 2016. ,
Analysis of molecular variance inferred from metric distances among DNA haplotypes -Application to human mitochondrial-DNA restriction data, Genetics, vol.131, pp.479-491, 1992. ,
ARLEQUIN (version 3.0): an integrated software package for population genetics data analysis, Evolutionary Bioinformatics Online, vol.1, pp.47-50, 2005. ,
NUCLEAR AND MITOCHONDRIAL SEQUENCE DATA REVEAL AND CONCEAL DIFFERENT DEMOGRAPHIC HISTORIES AND POPULATION GENETIC PROCESSES IN CARIBBEAN REEF FISHES, Evolution, vol.17, issue.12, pp.3380-3397, 2010. ,
DOI : 10.1111/j.1558-5646.2010.01071.x
Gene-Flow in a Mosaic Hybrid Zone: Is Local Introgression Adaptive?, Genetics, vol.197, issue.3, pp.939-951, 2014. ,
DOI : 10.1534/genetics.114.161380
FishBase, World Wide Web electronic publication, www.fishbase.org, version, 2015. ,
Iterative Ecological Radiation and Convergence during the Evolutionary History of Damselfishes (Pomacentridae), The American Naturalist, vol.181, issue.1, pp.94-113, 2013. ,
DOI : 10.1086/668599
Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection, Genetics, vol.147, pp.915-925, 1997. ,
Hierarchical behaviour, habitat use and species size differences shape evolutionary outcomes of hybridization in a coral reef fish, Journal of Evolutionary Biology, vol.9, issue.1, pp.205-222, 2015. ,
DOI : 10.1111/jeb.12557
Genetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus), Journal of Biogeography, vol.230, issue.1, pp.133-147, 2010. ,
DOI : 10.1111/j.1365-2699.2009.02188.x
URL : https://hal.archives-ouvertes.fr/hal-00609442
Phylogeography of the reef fish Cephalopholis argus(Epinephelidae) indicates Pleistocene isolation across the indo-pacific barrier with contemporary overlap in the coral triangle, BMC Evolutionary Biology, vol.412, issue.5, p.189, 2011. ,
DOI : 10.1186/1471-2148-11-189
Origins of species richness in the Indo-Malay-Philippine biodiversity hotspot: evidence for the centre of overlap hypothesis, Journal of Biogeography, vol.33, issue.9, pp.1638-1648, 2013. ,
DOI : 10.1111/jbi.12126
Evolution of pygmy angelfishes: Recent divergences, introgression, and the usefulness of color in taxonomy, Molecular Phylogenetics and Evolution, vol.74, pp.38-47, 2014. ,
DOI : 10.1016/j.ympev.2014.01.017
Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation, BMC Evolutionary Biology, vol.10, issue.1, p.118, 2010. ,
DOI : 10.1186/1471-2148-10-118
URL : http://doi.org/10.1186/1471-2148-10-118
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA, Journal of Molecular Evolution, vol.275, issue.3, pp.160-174, 1985. ,
DOI : 10.1007/BF02101694
Isolation with Migration Models for More Than Two Populations, Molecular Biology and Evolution, vol.27, issue.4, pp.905-920, 2010. ,
DOI : 10.1093/molbev/msp296
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2877539
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics, Proceedings of the National Academy of Sciences, vol.25, issue.2, pp.2785-2790, 2007. ,
DOI : 10.1016/0040-5809(70)90047-X
Marine hybrid hotspot at Indo-Pacific biogeographic border, Biology Letters, vol.26, issue.1, pp.258-261, 2009. ,
DOI : 10.1016/j.ympev.2006.02.012
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2665801
Hybridisation among coral reef fishes at Christmas Island and the Cocos (Keeling) Islands, Raffles Bulletin of Zoology, vol.30, pp.220-226, 2014. ,
High population connectivity across the Indo-Pacific: Congruent lack of phylogeographic structure in three reef fish congeners, Molecular Phylogenetics and Evolution, vol.49, issue.2, pp.629-638, 2008. ,
DOI : 10.1016/j.ympev.2008.08.023
Long-term panmixia in a cosmopolitan Indo-Pacific coral reef fish and a nebulous genetic boundary with its broadly sympatric sister species, Journal of Evolutionary Biology, vol.424, issue.4, pp.783-799, 2013. ,
DOI : 10.1111/jeb.12092
Cryptic Diversity in Indo-Pacific Coral-Reef Fishes Revealed by DNA-Barcoding Provides New Support to the Centre-of-Overlap Hypothesis, PLoS ONE, vol.2008, issue.3, p.28987, 2012. ,
DOI : 10.1371/journal.pone.0028987.s005
URL : https://hal.archives-ouvertes.fr/hal-00722781
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data, Bioinformatics, vol.28, issue.12, pp.1647-1649, 2012. ,
DOI : 10.1093/bioinformatics/bts199
The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutations, Genetics, pp.61-893, 1969. ,
Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish, Marine Biology, vol.292, issue.Suppl., pp.659-670, 2007. ,
DOI : 10.1007/s00227-006-0372-7
PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses, Molecular Biology and Evolution, vol.29, issue.6, pp.1695-1701, 2012. ,
DOI : 10.1093/molbev/mss020
URL : https://hal.archives-ouvertes.fr/lirmm-00705211
Parallel genetic divergence among coastal-marine ecotype pairs of European anchovy explained by differential introgression after secondary contact, Molecular Ecology, vol.7, issue.13, pp.3187-3202, 2016. ,
DOI : 10.1101/016832
SPECIES COMPLEX, Evolution, vol.40, pp.1218-1230, 2010. ,
DOI : 10.1111/j.1558-5646.2009.00917.x
The Great American Schism: Divergence of Marine Organisms After the Rise of the Central American Isthmus, Annual Review of Ecology, Evolution, and Systematics, vol.39, issue.1, pp.63-91, 2008. ,
DOI : 10.1146/annurev.ecolsys.38.091206.095815
The relationship between pelagic larval duration and range size in tropical reef fishes: a synthetic analysis, Proceedings of the Royal Society B: Biological Sciences, vol.230, issue.10, pp.585-591, 2005. ,
DOI : 10.1073/pnas.091367798
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data, Bioinformatics, vol.25, issue.11, pp.1451-1452, 2009. ,
DOI : 10.1093/bioinformatics/btp187
Mutualism with sea anemones triggered the adaptive radiation of clownfishes, BMC Evolutionary Biology, vol.12, issue.1, p.212, 2012. ,
DOI : 10.2307/1445439
Hybridisation and diversification in the adaptive radiation of clownfishes, BMC Evolutionary Biology, vol.1, issue.1, p.245, 2014. ,
DOI : 10.1186/s12862-014-0245-5
(Linnaeus, 1758): evidence of Indo-Pacific vicariance and genetic differentiation of peripheral populations, Biological Journal of the Linnean Society, vol.113, issue.4, pp.931-942, 2014. ,
DOI : 10.1111/bij.12378
URL : https://hal.archives-ouvertes.fr/ird-01144008
Gateway Computing Environments Workshop (GCE), 2010. Creating the CIPRES science gateway for inference of large phylogenetic trees, pp.1-8, 2010. ,
), Ecology and Evolution, vol.44, issue.2, pp.310-329, 2012. ,
DOI : 10.1002/ece3.83
The importance of ecological and behavioural data in studies of hybridisation among marine fishes, Reviews in Fish Biology and Fisheries, vol.26, issue.417, pp.181-198, 2016. ,
DOI : 10.1007/s11160-016-9420-7
Does genetic distance between parental species influence outcomes of hybridization among coral reef butterflyfishes? Molecular Ecology, pp.2757-2770, 2014. ,
DOI : 10.1111/mec.12762
Obliquity-paced Pliocene West Antarctic ice sheet oscillations, Nature, vol.310, issue.7236, pp.322-328, 2009. ,
DOI : 10.1038/nature07867
URL : http://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1186&context=geosciencefacpub
Molecular evolutionary genetics, 1987. ,
ISOLATION BY DISTANCE AND VICARIANCE DRIVE GENETIC STRUCTURE OF A CORAL REEF FISH IN THE PACIFIC OCEAN, Evolution, vol.15, issue.2, pp.378-399, 2002. ,
DOI : 10.1038/35059079
Speciation in birds, 2008. ,
Colour pattern as a single trait driving speciation in Hypoplectrus coral reef fishes?, Proceedings of the Royal Society B: Biological Sciences, vol.38, issue.2, pp.1265-1271, 2007. ,
DOI : 10.1111/j.1420-9101.2005.01001.x
Molecular systematics of the damselfishes (Teleostei: Pomacentridae): Bayesian phylogenetic analyses of mitochondrial and nuclear DNA sequences, Molecular Phylogenetics and Evolution, vol.31, issue.1, pp.66-88, 2004. ,
DOI : 10.1016/S1055-7903(03)00278-1
Speciation in tropical seas: Allopatry followed by range change, Molecular Phylogenetics and Evolution, vol.58, issue.3, pp.546-552, 2011. ,
DOI : 10.1016/j.ympev.2010.12.009
URL : https://hal.archives-ouvertes.fr/hal-00655356
Phylogeography of Two Moray Eels Indicates High Dispersal Throughout the Indo-Pacific, Journal of Heredity, vol.101, issue.4, pp.391-402, 2010. ,
DOI : 10.1093/jhered/esq036
Comparative phylogeography of four Indo-Pacific moray eel species (Muraenidae) reveals comparable ocean-wide genetic connectivity despite five-fold differences in available adult habitat, Marine Ecology Progress Series, vol.437, pp.269-277, 2011. ,
DOI : 10.3354/meps09248
Ecological speciation in tropical reef fishes, Proceedings of the Royal Society B: Biological Sciences, vol.138, issue.5603, pp.573-579, 2005. ,
DOI : 10.1126/science.1079365
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1564072
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space, Systematic Biology, vol.61, issue.3, pp.539-542, 2012. ,
DOI : 10.1093/sysbio/sys029
Hybridization and adaptive radiation, Trends in Ecology & Evolution, vol.19, issue.4, pp.198-207, 2004. ,
DOI : 10.1016/j.tree.2004.01.003
Sea-level fluctuations during the last glacial cycle, Nature, vol.423, issue.6942, pp.853-858, 2003. ,
DOI : 10.1038/nature01690
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, vol.30, issue.9, pp.1312-1313, 2014. ,
DOI : 10.1093/bioinformatics/btu033
A New Statistical Method for Haplotype Reconstruction from Population Data, The American Journal of Human Genetics, vol.68, issue.4, pp.978-989, 2001. ,
DOI : 10.1086/319501
URL : http://doi.org/10.1086/319501
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism, Genetics, vol.123, pp.583-595, 1989. ,
MARINE RADIATIONS AT SMALL GEOGRAPHIC SCALES: SPECIATION IN NEOTROPICAL REEF GOBIES (ELACATINUS), Evolution, vol.59, issue.2, pp.374-385, 2005. ,
DOI : 10.1554/04-590
Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations, Journal of Biogeography, vol.313, issue.5, pp.1153-1167, 2000. ,
DOI : 10.1016/0277-3791(87)90003-5
HYBRIDIZATION AND BARRIERS TO GENE FLOW IN AN ISLAND BIRD RADIATION, Evolution, vol.22, issue.5, pp.1490-1505, 2012. ,
DOI : 10.1111/j.1558-5646.2011.01550.x
URL : https://hal.archives-ouvertes.fr/hal-01199334
Recombination-filtered genomic datasets by information maximization, Bioinformatics, vol.23, issue.14, pp.1851-1853, 2007. ,
DOI : 10.1093/bioinformatics/btm253
URL : http://bioinformatics.oxfordjournals.org/cgi/content/short/23/14/1851
Evolution in Mendelian populations, Genetics, vol.16, pp.97-159, 1931. ,
Hybridization in coral reef fishes: Introgression and bi-directional gene exchange in Thalassoma (family Labridae), Molecular Phylogenetics and Evolution, vol.40, issue.1, pp.84-100, 2006. ,
DOI : 10.1016/j.ympev.2006.02.012
led the project including the search of funding support for completing this study. W.J.C. and P.B. contributed to the conception, design of the work, led the fieldwork and collected the samples, J.A.M.B. participated to fieldwork ,
C. revised successive versions of the manuscript. Data accessibility The nucleotide sequences weredeposited in GenBank ,
Relationships among four genera of mojarras (Teleostei: Perciformes: Gerreidae) from the western Atlantic and their tentative placement among percomorph fishes, Journal of Fish Biology, issue.sb, pp.70-202, 2007. ,
Esociform Phylogeny, Copeia, vol.2004, issue.3, pp.449-464007, 2004. ,
DOI : 10.1643/CG-03-087R1
New Caledonia (x3) A. vaigiensis (WJC4846) -Bali A. vaigiensis (WJC1296) -Caohagan A. sexfasciatus (x67) + A. vaigiensis (lineage A) (x100) + A. saxatilis ,
Puerto-Rico A. notatus (FJ616620) -Calamian A. margariteus (AY208618) -Réunion A. vaigiensis (WJC4854) -Bali Similiparma lurida (FJ616619) -Canary ,