Skip to Main content Skip to Navigation
Reports

Species delimitation algorithms applied to a large CO1 barcode dataset of lanternfish Diaphus spp

Laurent Millet 1, 2 Damien Lagrange 2, 1 Philippe Borsa 2, 1 
1 IRD - Institut de Recherche pour le Développement
2 ENTROPIE [Nouvelle-Calédonie] - Ecologie marine tropicale des océans Pacifique et Indien
Abstract : Here, we present a maximum-likelihood tree of 627 partial CO1 gene sequences of lanternfish, Diaphus spp., including 198 new sequences from the Tropical Southwestern Pacific marine bioregion. The tree is in ultrametric format, against which we present the results of species delimitation using the ABGD, GMYC, PTP and mPTP algorithms. Sixty operational taxonomic units or "species" were determined, of which 25 included haplotypes newly sampled from the Tropical Southwestern Pacific.
Keywords : Tropical Southwestern Pacific mesopelagic realm mitochondrial lineage haplogroup maximum-likelihood phylogeny
Document type :
Reports
Complete list of metadata
https://hal.ird.fr/ird-03634906
Contributor : Philippe Borsa Connect in order to contact the contributor
Submitted on : Friday, April 8, 2022 - 9:18:24 AM
Last modification on : Sunday, June 26, 2022 - 1:42:18 PM
Long-term archiving on: : Saturday, July 9, 2022 - 6:10:32 PM

File

 Restricted access
To satisfy the distribution rights of the publisher, the document is embargoed until : 2022-10-08

Please log in to resquest access to the document

Identifiers

  • HAL Id : ird-03634906, version 1

Collections

IRD | LARA | UNC

Citation

Laurent Millet, Damien Lagrange, Philippe Borsa. Species delimitation algorithms applied to a large CO1 barcode dataset of lanternfish Diaphus spp. [Research Report] Institut de recherche pour le déveoppement. 2022. ⟨ird-03634906⟩

Export

BibTeX TEI DC DCterms EndNote Datacite

Share

Metrics

Record views

30